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KR905068.1__ALJ97969.1__iA2_27__00027
Bact-VirKR905068.1__ALJ97969.1__iA2_27__00027
Identity
- Accession:
- KR905068 ↗
- Kingdom:
- phage
Quality
82.3
mean pLDDT
Taxonomy
TaxID: 1739609
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-96
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.77 | 49.0 | 5.64e-01 | 90.4% | 88.2% |
| 6e94A02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.69 | 24.0 | 3.08e-01 | 97.9% | 51.8% |
| 4nleA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.68 | 38.0 | 4.20e-01 | 87.2% | 67.1% |
| 8d3mA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.64 | 57.0 | 4.26e-01 | 100.0% | 47.5% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.64 | 57.0 | 4.28e-01 | 100.0% | 51.7% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.64 | 49.0 | 5.00e-01 | 93.6% | 83.5% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 42.0 | 4.03e-01 | 97.9% | 59.4% |
| 4ib4A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.63 | 55.0 | 3.94e-01 | 97.9% | 33.7% |
| 1m6nA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.61 | 48.0 | 4.32e-01 | 86.2% | 65.2% |
| 1vfpB02 | 1.20.1110.10 | Mainly Alpha › Up-down Bundle › Calcium-transporting ATPase, transmembrane domain › Calcium-transporting ATPase, transmembrane domain | 0.61 | 52.0 | 3.33e-01 | 91.5% | 67.3% |
| 2i53A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 39.0 | 3.75e-01 | 96.8% | 55.9% |
| 5i41B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.60 | 35.0 | 3.93e-01 | 93.6% | 77.6% |
| 2qywA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.60 | 40.0 | 4.02e-01 | 76.6% | 67.4% |
| 4jndA01 | 1.10.1740.220 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.59 | 46.0 | 4.15e-01 | 97.9% | 60.8% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.58 | 40.0 | 3.64e-01 | 70.2% | 91.3% |
| 2nsfA01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.57 | 38.0 | 3.24e-01 | 94.7% | 40.3% |
| 6gpxB00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.56 | 48.0 | 3.57e-01 | 97.9% | 38.0% |
| 1vcsA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.56 | 38.0 | 3.72e-01 | 74.5% | 63.7% |
| 3urzA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 36.0 | 2.82e-01 | 73.4% | 30.2% |
| 1z0pA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 34.0 | 3.79e-01 | 70.2% | 79.5% |
| 6gyhA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 47.0 | 3.60e-01 | 97.9% | 64.4% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 40.0 | 3.91e-01 | 81.9% | 71.3% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.54 | 38.0 | 3.96e-01 | 75.5% | 78.8% |
| 3cjlA00 | 3.10.20.850 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 | 0.53 | 35.0 | 3.61e-01 | 94.7% | 70.5% |
| 2lfhA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.53 | 26.0 | 3.04e-01 | 73.4% | 58.8% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.53 | 38.0 | 3.65e-01 | 77.7% | 66.0% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 36.0 | 3.54e-01 | 70.2% | 75.5% |
| 1on2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 32.0 | 3.57e-01 | 87.2% | 79.2% |
| 6b8hO01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.52 | 35.0 | 3.48e-01 | 93.6% | 64.6% |
| 1lb3A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 40.0 | 3.34e-01 | 83.0% | 79.6% |
| 4oo2A02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 44.0 | 3.52e-01 | 98.9% | 52.9% |
| 2ckoA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.51 | 40.0 | 2.90e-01 | 84.0% | 61.2% |
| 3hwcA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 40.0 | 3.18e-01 | 89.4% | 39.5% |
| 1mkmB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 27.0 | 3.02e-01 | 79.8% | 64.5% |
| 3b1fA02 | 1.10.3660.10 | Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain | 0.50 | 39.0 | 3.72e-01 | 97.9% | 70.3% |
| 3cdhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 34.0 | 3.05e-01 | 70.2% | 67.2% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4148492 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.66 | 52.0 | 5.52e-01 | 95.7% | 98.8% |
| 5051450 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.65 | 55.0 | 4.32e-01 | 97.9% | 43.4% |
| 4121314 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.65 | 52.0 | 5.22e-01 | 98.9% | 85.3% |
| 3174635 | 4207.1.1.102 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › PF29925 | 0.65 | 48.0 | 4.90e-01 | 77.7% | 83.3% |
| 4139865 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.64 | 51.0 | 3.74e-01 | 94.7% | 32.1% |
| 3712097 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.64 | 47.0 | 4.87e-01 | 78.7% | 85.6% |
| 3256807 | 5001.1.1.80 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Dicty_CAR | 0.63 | 54.0 | 3.87e-01 | 97.9% | 32.1% |
| 5076415 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.62 | 46.0 | 3.14e-01 | 76.6% | 66.2% |
| 3236797 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.61 | 53.0 | 3.61e-01 | 98.9% | 26.4% |
| 3252760 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.60 | 44.0 | 4.17e-01 | 76.6% | 64.9% |
| 3714252 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.60 | 43.0 | 3.13e-01 | 75.5% | 76.6% |
| 3219667 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.59 | 51.0 | 3.90e-01 | 96.8% | 44.3% |
| 3717247 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.59 | 42.0 | 3.23e-01 | 74.5% | 71.8% |
| 3845883 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.59 | 42.0 | 4.07e-01 | 81.9% | 66.7% |
| 3549444 | 857.1.1.22 ↗ | a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › MIS13 | 0.58 | 40.0 | 3.66e-01 | 86.2% | 53.6% |
| 3718561 | 3843.1.1.11 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DGF-1_C | 0.58 | 43.0 | 3.01e-01 | 77.7% | 26.3% |
| 4585912 | 101.1.2.603 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9 | 0.58 | 45.0 | 2.99e-01 | 81.9% | 24.5% |
| 3920977 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.56 | 42.0 | 2.36e-01 | 77.7% | 51.3% |
| 3739245 | 4177.1.1.14 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_2 | 0.56 | 39.0 | 2.95e-01 | 71.3% | 85.6% |
| 3856326 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.56 | 40.0 | 2.58e-01 | 75.5% | 28.2% |
| 4975263 | 101.1.2.280 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_12 | 0.55 | 34.0 | 3.59e-01 | 87.2% | 68.2% |
| 3908132 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.55 | 39.0 | 2.87e-01 | 74.5% | 79.1% |
| 3595119 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.54 | 47.0 | 3.25e-01 | 97.9% | 27.5% |
| 3926956 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.54 | 46.0 | 3.61e-01 | 96.8% | 79.1% |
| 3938539 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.54 | 46.0 | 3.64e-01 | 96.8% | 83.4% |
| 4972124 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.54 | 41.0 | 2.88e-01 | 81.9% | 35.1% |
| 3498152 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.54 | 40.0 | 3.17e-01 | 77.7% | 82.6% |
| 3941001 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.54 | 40.0 | 2.87e-01 | 79.8% | 39.3% |
| 3597506 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.53 | 35.0 | 3.87e-01 | 79.8% | 84.0% |
| 3788734 | 1117.1.1.1 ↗ | alpha arrays › Enhancer of polycomb-like protein 1 (Epl1) N-terminal domain › Enhancer of polycomb-like protein 1 (Epl1) N-terminal domain › Enhancer of polycomb-like protein 1 (Epl1) N-terminal domain › EPL1 | 0.53 | 37.0 | 2.85e-01 | 91.5% | 30.9% |
| 3666875 | 1025.1.1.4 ↗ | alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain › DUF641 | 0.53 | 36.0 | 3.99e-01 | 88.3% | 88.0% |
| 3791628 | 1203.1.2.0 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 | 0.52 | 38.0 | 3.29e-01 | 75.5% | 95.9% |
| 3726168 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.51 | 36.0 | 3.47e-01 | 75.5% | 62.7% |
| 3737550 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 36.0 | 2.76e-01 | 73.4% | 41.8% |
| 3498924 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.51 | 37.0 | 3.26e-01 | 75.5% | 56.4% |
| 4475138 | 606.1.1.16 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Transposase_20 | 0.51 | 45.0 | 3.53e-01 | 97.9% | 66.0% |
| 4932083 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.51 | 40.0 | 3.67e-01 | 87.2% | 65.8% |
| 3952510 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.50 | 35.0 | 3.84e-01 | 77.7% | 90.7% |
| 4243427 | 3560.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Med8 | 0.50 | 36.0 | 3.04e-01 | 75.5% | 52.5% |