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KT001912.1__AKU43367.1__CPT_Silence30__00029

Bact-Vir

KT001912.1__AKU43367.1__CPT_Silence30__00029

Identity

Accession:
KT001912 ↗
Kingdom:
phage

Quality

61.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-57
PDB
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 67.0 6.44e-01 100.0% 82.1%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 72.0 7.03e-01 100.0% 96.3%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 70.0 6.05e-01 100.0% 69.7%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 70.0 6.45e-01 100.0% 83.9%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 68.0 5.53e-01 100.0% 57.6%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 69.0 5.80e-01 100.0% 65.0%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 67.0 6.47e-01 100.0% 87.7%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 61.0 5.15e-01 100.0% 55.0%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 66.0 5.10e-01 100.0% 51.9%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 64.0 5.59e-01 100.0% 73.0%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 62.0 5.68e-01 100.0% 97.0%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 59.0 5.58e-01 100.0% 87.1%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 62.0 5.49e-01 100.0% 71.4%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 58.0 5.35e-01 100.0% 73.8%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 54.0 4.69e-01 88.0% 90.4%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 56.0 5.18e-01 100.0% 89.6%
2rhiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 53.0 4.19e-01 100.0% 44.6%
3pqiA01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.61 50.0 4.28e-01 92.0% 100.0%
3tufB00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.60 45.0 3.33e-01 90.0% 90.5%
5vybA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.58 49.0 3.64e-01 100.0% 74.1%
2k3aA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.58 50.0 4.06e-01 100.0% 52.0%
7arcC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.57 45.0 3.38e-01 90.0% 65.9%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 42.0 3.38e-01 82.0% 76.0%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 3.50e-01 100.0% 47.0%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 43.0 4.08e-01 90.0% 77.0%
1eslA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.55 45.0 3.32e-01 100.0% 70.7%
4uwwA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.53 45.0 3.44e-01 100.0% 81.5%
3qzqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 42.0 3.88e-01 92.0% 95.7%
4jivD00 2.60.200.60 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 42.0 3.62e-01 100.0% 84.9%
4edgA01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.52 39.0 3.00e-01 88.0% 57.5%
4hc5D00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 36.0 2.76e-01 86.0% 29.0%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 39.0 3.41e-01 98.0% 52.9%
3d3rA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 43.0 3.69e-01 96.0% 61.4%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.50 42.0 3.74e-01 100.0% 68.8%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4878500 5077.1.1.5 extended segments › Chlorophyll a-b binding protein › Chlorophyll a-b binding protein › Chlorophyll a-b binding protein › PSI_PsaE 0.84 66.0 6.61e-01 86.0% 88.2%
4002985 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 75.0 6.99e-01 100.0% 85.0%
3294025 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 67.0 6.56e-01 92.0% 98.2%
3486326 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 68.0 6.59e-01 100.0% 85.5%
3616622 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 69.0 6.38e-01 100.0% 88.9%
3233461 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 68.0 6.39e-01 100.0% 91.7%
3349135 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 67.0 5.50e-01 100.0% 65.6%
145843 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.74 66.0 5.10e-01 100.0% 51.9%
3824699 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 66.0 6.03e-01 100.0% 80.0%
3630782 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.72 67.0 4.67e-01 100.0% 41.4%
3936474 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 61.0 4.92e-01 100.0% 49.5%
3315471 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.72 65.0 5.39e-01 100.0% 58.8%
4140958 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 63.0 5.52e-01 100.0% 72.0%
3645842 4.1.1.162 beta barrels › SH3 › SH3 › SH3 › DUF502 0.72 64.0 5.47e-01 100.0% 71.2%
3659671 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.71 65.0 5.75e-01 100.0% 80.0%
3879132 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 63.0 5.49e-01 100.0% 80.0%
3703932 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.98e-01 100.0% 83.3%
3676628 4.1.1.162 beta barrels › SH3 › SH3 › SH3 › DUF502 0.71 64.0 4.77e-01 100.0% 47.5%
4515863 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 60.0 4.74e-01 100.0% 49.1%
3740208 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.70 62.0 5.70e-01 100.0% 81.5%
3843359 4.1.1.246 beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.69 59.0 5.02e-01 100.0% 70.6%
4225787 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 59.0 4.72e-01 100.0% 54.0%
3683031 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 53.0 4.74e-01 100.0% 62.7%
3589730 4.1.1.252 beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.65 56.0 4.88e-01 100.0% 80.0%
4594253 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 51.0 4.60e-01 92.0% 90.0%
3565994 5.1.4.137 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nbas_N 0.61 49.0 2.85e-01 94.0% 20.2%
3758536 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.73e-01 100.0% 75.7%
3441677 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 50.0 5.08e-01 100.0% 96.0%
4946332 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 44.0 4.18e-01 82.0% 100.0%
3444533 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.59 50.0 3.42e-01 96.0% 98.9%
3187808 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 45.0 2.77e-01 90.0% 25.2%
3236452 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.57 48.0 3.51e-01 100.0% 75.3%
3979552 219.1.1.90 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF1287 0.56 47.0 3.33e-01 100.0% 28.6%
5074071 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.54 38.0 2.31e-01 76.0% 91.6%
4440689 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 39.0 3.72e-01 92.0% 69.2%
4340568 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.51 39.0 2.98e-01 86.0% 76.0%
3768742 4.1.1.355 beta barrels › SH3 › SH3 › SH3 › WAC_Acf1_DNA_bd 0.51 40.0 2.68e-01 98.0% 21.9%
D2 high residues 112-189
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4epcA01 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.81 59.0 5.83e-01 75.6% 88.9%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.79 54.0 5.22e-01 70.5% 87.2%
1vx7N01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 57.0 5.59e-01 98.7% 96.5%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.65 43.0 3.80e-01 93.6% 45.4%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.65 46.0 4.67e-01 92.3% 75.3%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.64 45.0 3.56e-01 74.4% 39.0%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 54.0 5.29e-01 96.2% 91.8%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.62 45.0 3.82e-01 75.6% 90.9%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.59 42.0 3.78e-01 75.6% 96.4%
2j3tC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 42.0 3.53e-01 78.2% 99.3%
3sxxD02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.67e-01 78.2% 93.6%
3vgzC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.99e-01 97.4% 93.8%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.52 40.0 2.99e-01 84.6% 87.6%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 3.42e-01 79.5% 81.9%
1u2kA02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.51 42.0 3.56e-01 91.0% 68.8%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4213326 4.1.1.86 beta barrels › SH3 › SH3 › SH3 › GW 0.83 58.0 5.74e-01 71.8% 88.7%
3788021 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 53.0 5.48e-01 74.4% 86.7%
4659299 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 52.0 5.78e-01 97.4% 95.0%
3472562 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.74 50.0 4.43e-01 70.5% 76.4%
5022848 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 51.0 5.65e-01 96.2% 100.0%
4261791 4.1.1.24 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.69 62.0 5.06e-01 100.0% 58.6%
3258767 4.1.1.24 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.69 62.0 4.97e-01 100.0% 56.7%
3624441 4.1.1.24 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.69 62.0 5.07e-01 100.0% 60.7%
3778257 4.1.1.24 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.69 61.0 5.05e-01 100.0% 60.7%
4075150 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.67 45.0 3.41e-01 93.6% 28.2%
4957409 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 39.0 4.57e-01 70.5% 90.0%
4259069 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 45.0 3.31e-01 85.9% 27.0%
3934192 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 47.0 5.27e-01 94.9% 96.7%
3898198 220.1.1.184 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP 0.66 45.0 3.84e-01 70.5% 75.2%
3763418 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.02e-01 85.9% 95.6%
1507470 4.1.1.5 beta barrels › SH3 › SH3 › SH3 › KOW,Ribosomal_L14e 0.65 57.0 4.77e-01 100.0% 61.2%
3478678 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 44.0 4.51e-01 70.5% 97.3%
3995160 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.64 41.0 4.83e-01 85.9% 100.0%
3619619 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.86e-01 100.0% 84.3%
3607885 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 44.0 4.19e-01 73.1% 92.6%
3464886 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 43.0 4.81e-01 100.0% 91.7%
3601857 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 43.0 4.15e-01 70.5% 95.6%
3773782 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 45.0 3.29e-01 75.6% 53.5%
3878271 101.1.2.284 alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd 0.63 45.0 3.54e-01 74.4% 56.1%
3199835 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 43.0 4.41e-01 73.1% 93.3%
3253768 4.1.1.308 beta barrels › SH3 › SH3 › SH3 › PF31073 0.62 48.0 5.01e-01 91.0% 91.4%
3514556 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.67e-01 100.0% 85.7%
3592541 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.55e-01 82.1% 87.5%
None 0.59 49.0 2.85e-01 89.7% 55.9%
3520640 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 40.0 3.12e-01 71.8% 45.4%
3891578 4.1.1.232 beta barrels › SH3 › SH3 › SH3 › SH3_Tf2-1 0.58 44.0 4.67e-01 91.0% 90.0%
3249603 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.57e-01 91.0% 89.3%
3521181 4.1.1.229 beta barrels › SH3 › SH3 › SH3 0.55 45.0 3.51e-01 91.0% 72.6%
3498889 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 3.76e-01 96.2% 74.1%
3913725 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.53 48.0 4.08e-01 100.0% 92.8%
3411126 109.4.1.1447 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29708 0.53 42.0 2.43e-01 92.3% 47.9%
4025925 219.1.1.37 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C97 0.52 45.0 3.95e-01 100.0% 90.4%
3665882 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.52 46.0 3.88e-01 100.0% 85.2%
3967232 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.51 42.0 3.70e-01 93.6% 97.5%