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KT001912.1__AKU43398.1__CPT_Silence61__00060
Bact-VirKT001912.1__AKU43398.1__CPT_Silence61__00060
Identity
- Accession:
- KT001912 ↗
- Kingdom:
- phage
Quality
71.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-47
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kflA02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.78 | 69.0 | 5.01e-01 | 100.0% | 38.0% |
| 1vd4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.70 | 60.0 | 5.41e-01 | 100.0% | 80.6% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 43.0 | 3.28e-01 | 86.4% | 25.9% |
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.62 | 47.0 | 3.83e-01 | 88.6% | 73.7% |
| 4jpbW01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 45.0 | 4.21e-01 | 86.4% | 98.4% |
| 7ob9B02 | 3.90.1800.10 | Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain | 0.60 | 48.0 | 3.87e-01 | 100.0% | 43.1% |
| 3ervA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.60 | 41.0 | 2.72e-01 | 72.7% | 35.0% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.60 | 46.0 | 4.01e-01 | 86.4% | 77.1% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 43.0 | 4.04e-01 | 95.5% | 73.8% |
| 1c9fA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 39.0 | 3.24e-01 | 100.0% | 37.9% |
| 2dgmA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.56 | 38.0 | 2.36e-01 | 70.5% | 67.7% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 40.0 | 3.84e-01 | 86.4% | 79.7% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.55 | 42.0 | 3.38e-01 | 88.6% | 92.9% |
| 6fmeA02 | 3.90.400.10 | Alpha Beta › Alpha-Beta Complex › Oligo-1,6-glucosidase; domain 2 › Oligo-1,6-glucosidase; Domain 2 | 0.54 | 40.0 | 3.33e-01 | 81.8% | 49.4% |
| 1upsA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.54 | 42.0 | 3.22e-01 | 97.7% | 75.2% |
| 2qdlA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 39.0 | 3.70e-01 | 86.4% | 100.0% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.51 | 39.0 | 3.51e-01 | 97.7% | 70.1% |
| 3zx7A02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 38.0 | 2.96e-01 | 97.7% | 77.4% |
| 7bkea01 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 36.0 | 3.17e-01 | 81.8% | 67.6% |
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.50 | 42.0 | 3.89e-01 | 97.7% | 100.0% |
ECOD (62)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3229548 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.82 | 71.0 | 7.13e-01 | 97.7% | 100.0% |
| 3205074 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.80 | 72.0 | 6.89e-01 | 100.0% | 94.0% |
| 4999659 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.80 | 68.0 | 6.68e-01 | 100.0% | 100.0% |
| 4982530 | 2005.1.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 | 0.77 | 69.0 | 4.10e-01 | 100.0% | 13.7% |
| 4310743 | 375.1.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 | 0.76 | 68.0 | 6.83e-01 | 100.0% | 100.0% |
| 4077229 | 2005.1.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 | 0.76 | 68.0 | 3.97e-01 | 100.0% | 13.6% |
| 4235440 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 62.0 | 6.09e-01 | 100.0% | 94.0% |
| 3654449 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.75 | 47.0 | 5.34e-01 | 84.1% | 96.6% |
| 4992515 | 375.1.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 | 0.75 | 67.0 | 6.49e-01 | 100.0% | 88.0% |
| 4669770 | 2005.1.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 | 0.75 | 67.0 | 3.91e-01 | 100.0% | 12.5% |
| 3765704 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.75 | 66.0 | 3.68e-01 | 100.0% | 8.2% |
| 4131551 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.73 | 61.0 | 3.43e-01 | 100.0% | 7.3% |
| 4234481 | 2005.1.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 | 0.73 | 60.0 | 3.59e-01 | 100.0% | 12.2% |
| 4361081 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 67.0 | 6.66e-01 | 100.0% | 100.0% |
| 4322655 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 62.0 | 6.18e-01 | 100.0% | 100.0% |
| 3997793 | 11.1.1.504 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Dynactin_p62 | 0.70 | 58.0 | 3.80e-01 | 100.0% | 35.3% |
| 5002533 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.69 | 54.0 | 4.17e-01 | 88.6% | 88.6% |
| 4977157 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.68 | 49.0 | 4.95e-01 | 79.5% | 84.4% |
| 4369866 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.68 | 48.0 | 4.95e-01 | 86.4% | 85.0% |
| 3477189 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.66 | 55.0 | 5.47e-01 | 97.7% | 100.0% |
| 3286579 | 2003.1.10.9 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Lant_dehydr_N | 0.65 | 53.0 | 4.23e-01 | 95.5% | 68.4% |
| 3177203 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.63 | 51.0 | 5.10e-01 | 97.7% | 100.0% |
| 3920058 | 708.1.2.10 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › HECT_2 | 0.62 | 48.0 | 3.62e-01 | 100.0% | 58.3% |
| 4989647 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.62 | 44.0 | 4.17e-01 | 86.4% | 60.0% |
| 3503283 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.62 | 43.0 | 4.34e-01 | 88.6% | 73.3% |
| 4854353 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.62 | 41.0 | 3.98e-01 | 79.5% | 58.5% |
| 4139409 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.62 | 48.0 | 4.94e-01 | 90.9% | 100.0% |
| 2429646 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.62 | 46.0 | 3.60e-01 | 84.1% | 45.5% |
| 3208301 | 66.1.1.3 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox | 0.61 | 47.0 | 3.62e-01 | 93.2% | 73.3% |
| 3910652 | 66.1.1.3 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox | 0.61 | 49.0 | 3.85e-01 | 100.0% | 78.2% |
| 3503838 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.61 | 46.0 | 3.66e-01 | 90.9% | 40.0% |
| 4292319 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.61 | 50.0 | 2.84e-01 | 97.7% | 9.1% |
| 3970061 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.61 | 45.0 | 2.96e-01 | 86.4% | 99.5% |
| 3214827 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 49.0 | 3.91e-01 | 100.0% | 79.0% |
| 4818395 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.60 | 48.0 | 4.08e-01 | 100.0% | 51.8% |
| 1557343 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.60 | 46.0 | 4.01e-01 | 86.4% | 77.1% |
| 3214830 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 48.0 | 3.97e-01 | 100.0% | 84.2% |
| 3398222 | 136.1.1.3 ↗ | alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › An_peroxidase | 0.60 | 44.0 | 2.44e-01 | 79.5% | 73.7% |
| 3231897 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.59 | 47.0 | 2.80e-01 | 90.9% | 58.3% |
| 4964214 | 375.8.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B | 0.59 | 43.0 | 4.12e-01 | 86.4% | 67.3% |
| 4049910 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.58 | 47.0 | 4.70e-01 | 93.2% | 97.8% |
| 3388895 | 220.1.1.170 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin | 0.58 | 45.0 | 3.49e-01 | 90.9% | 76.4% |
| 5048636 | 375.1.1.9 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom | 0.58 | 42.0 | 4.33e-01 | 84.1% | 90.0% |
| 3702154 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 44.0 | 3.93e-01 | 95.5% | 74.7% |
| 4011287 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.58 | 46.0 | 3.98e-01 | 90.9% | 67.1% |
| 4031209 | 2003.1.10.9 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Lant_dehydr_N | 0.57 | 46.0 | 3.72e-01 | 95.5% | 67.4% |
| 3331838 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.57 | 45.0 | 4.34e-01 | 90.9% | 78.0% |
| 3594759 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 41.0 | 4.30e-01 | 84.1% | 87.5% |
| 3846283 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.57 | 40.0 | 3.92e-01 | 77.3% | 70.0% |
| 3510866 | 304.103.1.3 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › MMADHC | 0.57 | 45.0 | 3.22e-01 | 100.0% | 64.9% |
| 4990490 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.57 | 45.0 | 3.61e-01 | 95.5% | 61.0% |
| 4984442 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.55 | 39.0 | 2.79e-01 | 88.6% | 79.4% |
| 3475436 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.54 | 45.0 | 3.93e-01 | 97.7% | 67.1% |
| 4149829 | 220.1.1.114 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF5673 | 0.53 | 40.0 | 3.54e-01 | 90.9% | 86.7% |
| 3566388 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 39.0 | 3.99e-01 | 95.5% | 86.0% |
| 3351656 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 45.0 | 3.45e-01 | 100.0% | 64.8% |
| 3450849 | 1.1.1.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD | 0.52 | 43.0 | 3.23e-01 | 97.7% | 60.0% |
| 3965555 | 10.12.1.40 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 | 0.52 | 39.0 | 2.43e-01 | 84.1% | 20.4% |
| 3839369 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.52 | 43.0 | 3.58e-01 | 95.5% | 68.8% |
| 4527355 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.51 | 41.0 | 3.67e-01 | 95.5% | 78.3% |
| 4230177 | 2.8.1.2 ↗ | beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C_2 | 0.50 | 41.0 | 3.60e-01 | 95.5% | 85.7% |
| 5082170 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 38.0 | 2.51e-01 | 88.6% | 91.3% |
D2
medium
residues 51-101