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KT001912.1__AKU43404.1__CPT_Silence67__00066
Bact-VirKT001912.1__AKU43404.1__CPT_Silence67__00066
Identity
- Accession:
- KT001912 ↗
- Kingdom:
- phage
Quality
73.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-62
Domain cluster:
rep: OQ504960.1__WID41994.1__X__00022__D3-68
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 58.0 | 5.69e-01 | 100.0% | 72.7% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 57.0 | 5.58e-01 | 96.7% | 71.2% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 62.0 | 6.53e-01 | 100.0% | 96.4% |
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 53.0 | 5.81e-01 | 93.4% | 91.8% |
| 1m5q101 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 58.0 | 5.64e-01 | 100.0% | 83.8% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 57.0 | 5.06e-01 | 100.0% | 65.1% |
| 2z8lA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.67 | 46.0 | 3.65e-01 | 100.0% | 36.8% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 55.0 | 4.96e-01 | 100.0% | 67.5% |
| 2pstX00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.65 | 36.0 | 3.65e-01 | 98.4% | 52.5% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 56.0 | 5.13e-01 | 100.0% | 74.0% |
| 4f7uF00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 57.0 | 5.39e-01 | 98.4% | 82.2% |
| 2fb7A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 53.0 | 4.92e-01 | 98.4% | 87.5% |
| 7c2fB01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.61 | 37.0 | 3.34e-01 | 100.0% | 43.0% |
| 5w5yB08 | 3.90.1800.10 | Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain | 0.58 | 39.0 | 3.10e-01 | 72.1% | 66.0% |
| 3mpoA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.58 | 39.0 | 3.32e-01 | 70.5% | 58.9% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.57 | 35.0 | 3.65e-01 | 96.7% | 64.9% |
| 2pq0A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.57 | 38.0 | 3.33e-01 | 70.5% | 62.0% |
| 2iq1A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.55 | 39.0 | 2.66e-01 | 77.0% | 66.1% |
| 1ylnA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 48.0 | 3.96e-01 | 100.0% | 57.0% |
| 4uzgA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 46.0 | 3.48e-01 | 100.0% | 40.4% |
| 6p0cA03 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.53 | 37.0 | 3.00e-01 | 75.4% | 97.6% |
| 2l6oA01 | 2.40.10.320 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain | 0.52 | 38.0 | 3.66e-01 | 80.3% | 84.7% |
| 2qqrA02 | 3.10.330.70 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.52 | 40.0 | 4.25e-01 | 93.4% | 100.0% |
| 2piaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 44.0 | 3.72e-01 | 100.0% | 58.7% |
| 3b8fB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.50 | 44.0 | 3.37e-01 | 100.0% | 42.3% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.50 | 36.0 | 3.48e-01 | 100.0% | 65.8% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 25624 | 4.1.1.45 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF903 | 0.79 | 62.0 | 6.68e-01 | 96.7% | 98.1% |
| 4123180 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.79 | 58.0 | 5.45e-01 | 100.0% | 64.0% |
| 4031509 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 58.0 | 5.84e-01 | 95.1% | 78.3% |
| 4658938 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.79 | 58.0 | 5.09e-01 | 100.0% | 53.3% |
| 3959440 | 4.1.1.180 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3107 | 0.77 | 68.0 | 6.74e-01 | 100.0% | 100.0% |
| 4359892 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.77 | 58.0 | 5.31e-01 | 100.0% | 61.3% |
| 4478186 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 52.0 | 5.91e-01 | 93.4% | 97.8% |
| 4400642 | 4.1.1.257 ↗ | beta barrels › SH3 › SH3 › SH3 › Flag1_repress | 0.74 | 55.0 | 4.91e-01 | 96.7% | 56.5% |
| 5027750 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 56.0 | 5.91e-01 | 98.4% | 90.9% |
| 4380345 | 4.1.1.257 ↗ | beta barrels › SH3 › SH3 › SH3 › Flag1_repress | 0.72 | 59.0 | 5.25e-01 | 100.0% | 63.5% |
| 3942510 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.72 | 53.0 | 4.62e-01 | 100.0% | 51.6% |
| 3281602 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.71 | 47.0 | 5.25e-01 | 100.0% | 87.5% |
| 3590658 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 64.0 | 6.12e-01 | 100.0% | 92.9% |
| 4623707 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.70 | 52.0 | 4.53e-01 | 100.0% | 51.6% |
| 4397568 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.70 | 52.0 | 4.59e-01 | 100.0% | 54.4% |
| 4158495 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.70 | 51.0 | 4.58e-01 | 100.0% | 54.4% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.70 | 45.0 | 5.05e-01 | 100.0% | 91.1% |
| 5056826 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.68 | 55.0 | 5.39e-01 | 100.0% | 81.5% |
| 4971470 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.68 | 54.0 | 5.03e-01 | 98.4% | 69.3% |
| 4221708 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.67 | 56.0 | 5.36e-01 | 100.0% | 80.0% |
| 5050320 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.66 | 52.0 | 4.90e-01 | 98.4% | 69.3% |
| 4026408 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.65 | 53.0 | 4.53e-01 | 98.4% | 55.0% |
| 4071824 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.65 | 56.0 | 5.20e-01 | 100.0% | 76.0% |
| 5048974 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 58.0 | 4.73e-01 | 100.0% | 56.4% |
| 3272363 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.64 | 57.0 | 4.92e-01 | 100.0% | 64.2% |
| 4979291 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.64 | 51.0 | 4.81e-01 | 100.0% | 72.0% |
| 3603549 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 55.0 | 5.02e-01 | 100.0% | 74.4% |
| 3781 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.61 | 53.0 | 3.78e-01 | 100.0% | 59.5% |
| 4485354 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.61 | 54.0 | 4.64e-01 | 100.0% | 63.8% |
| 5059830 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.60 | 53.0 | 4.68e-01 | 100.0% | 75.6% |
| 4137160 | 4.1.1.301 ↗ | beta barrels › SH3 › SH3 › SH3 › MJ1316 | 0.59 | 48.0 | 4.42e-01 | 100.0% | 70.0% |
| 4147155 | 11.22.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Dispersin › Dispersin | 0.58 | 41.0 | 3.61e-01 | 100.0% | 51.1% |
| 3668787 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.54 | 46.0 | 3.97e-01 | 98.4% | 81.0% |
| 3590261 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.54 | 40.0 | 3.93e-01 | 100.0% | 75.0% |
| 3930427 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.53 | 39.0 | 3.88e-01 | 100.0% | 75.4% |
| 2526842 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.52 | 45.0 | 3.06e-01 | 100.0% | 29.9% |
| 4928815 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 36.0 | 3.54e-01 | 100.0% | 67.7% |
| 4931202 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 45.0 | 3.96e-01 | 100.0% | 97.8% |
| 224066 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.51 | 38.0 | 3.58e-01 | 100.0% | 64.9% |
| 5033534 | 1.1.4.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C | 0.51 | 42.0 | 3.63e-01 | 93.4% | 65.0% |
| 4978421 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.51 | 44.0 | 3.57e-01 | 100.0% | 64.2% |
| 332272 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.50 | 44.0 | 3.37e-01 | 100.0% | 42.3% |