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KT001914.1__AKU43566.1__CPT_Seuss40__00040

Bact-Vir

KT001914.1__AKU43566.1__CPT_Seuss40__00040

Identity

Accession:
KT001914 ↗
Kingdom:
phage

Quality

83.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-60
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.63 37.0 3.89e-01 95.0% 64.8%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 42.0 3.90e-01 93.3% 55.1%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.56 39.0 3.70e-01 96.7% 59.7%
5azpA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.55 39.0 3.61e-01 96.7% 56.8%
3px5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 40.0 3.32e-01 80.0% 87.1%
2chrA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 40.0 3.23e-01 80.0% 80.3%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 40.0 3.21e-01 100.0% 40.0%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 34.0 3.21e-01 96.7% 48.1%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 39.0 3.24e-01 80.0% 90.4%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 35.0 2.90e-01 100.0% 37.6%
3ik4B01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 37.0 3.11e-01 80.0% 88.1%
1bqgA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 38.0 3.02e-01 81.7% 84.8%
4g79A00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.52 42.0 3.42e-01 98.3% 82.8%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.51 42.0 3.35e-01 98.3% 43.5%
1wjmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 34.0 2.83e-01 100.0% 35.0%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 37.0 3.11e-01 98.3% 41.9%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 42.0 3.17e-01 95.0% 85.3%
3ijlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 36.0 3.10e-01 80.0% 89.8%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4445602 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 44.0 3.86e-01 96.7% 55.6%
3908519 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 36.0 2.91e-01 100.0% 32.0%
4384055 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 45.0 4.18e-01 98.3% 77.5%
4147906 325.1.7.29 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Mad3_BUB1_II 0.54 46.0 4.19e-01 96.7% 78.8%
3333639 11.1.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.53 44.0 3.41e-01 95.0% 58.6%
3336425 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.40e-01 93.3% 63.0%
4004174 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.53 35.0 2.29e-01 95.0% 14.1%
4639457 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 45.0 4.05e-01 96.7% 69.4%
4042093 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 45.0 3.98e-01 98.3% 71.1%
4573066 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 42.0 3.69e-01 95.0% 58.9%
3523477 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.52 30.0 2.17e-01 88.3% 17.8%
4992554 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.52 42.0 3.37e-01 100.0% 61.1%
5028105 1.1.1.1 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.52 43.0 3.43e-01 98.3% 68.9%
4411624 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 41.0 3.81e-01 96.7% 75.3%
4984547 1.1.1.18 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.51 40.0 3.44e-01 96.7% 77.1%
3709155 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 34.0 2.18e-01 91.7% 13.9%
D2 medium residues 61-128
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dlwA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.72 60.0 5.05e-01 92.6% 97.4%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.72 56.0 5.09e-01 83.8% 71.9%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 5.68e-01 91.2% 98.2%
1ux8A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.70 58.0 4.91e-01 94.1% 99.2%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.69 52.0 4.55e-01 83.8% 90.8%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 57.0 5.08e-01 95.6% 80.4%
3aq5A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.68 58.0 4.83e-01 94.1% 97.4%
6cy5A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.68 53.0 4.81e-01 83.8% 71.9%
2yhsA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.67 52.0 4.67e-01 83.8% 68.0%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.66 53.0 5.55e-01 95.6% 98.4%
1hbgA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.65 56.0 4.43e-01 98.5% 97.3%
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.65 53.0 4.16e-01 95.6% 42.4%
1zu4A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.64 49.0 4.56e-01 83.8% 66.7%
1xfiA02 1.20.1700.10 Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like 0.64 44.0 4.09e-01 73.5% 70.0%
2wauA01 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.63 48.0 3.82e-01 86.8% 61.9%
1r4wA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 43.0 3.12e-01 73.5% 65.4%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 47.0 4.53e-01 83.8% 83.3%
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.61 49.0 4.70e-01 92.6% 80.2%
4iu9B02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.61 51.0 3.78e-01 98.5% 81.8%
2ntxA01 1.20.58.2010 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 0.61 45.0 3.26e-01 80.9% 34.8%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.61 48.0 4.10e-01 89.7% 79.0%
2nr4A02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.60 44.0 4.68e-01 80.9% 100.0%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.25e-01 86.8% 88.5%
4eqyA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.59 49.0 4.91e-01 98.5% 100.0%
1ug7A00 1.20.120.360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Axin interactor, dorsalization-associated protein, N-terminal domain 0.59 46.0 3.83e-01 88.2% 72.7%
2mpcA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.59 48.0 4.41e-01 91.2% 95.6%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.58 42.0 3.71e-01 77.9% 74.8%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 50.0 4.75e-01 95.6% 91.4%
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.57 47.0 4.49e-01 95.6% 83.5%
2dodA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.56 43.0 4.17e-01 97.1% 73.2%
6p73A02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 45.0 3.62e-01 91.2% 55.9%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.56 42.0 3.75e-01 83.8% 85.3%
3gn3A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 41.0 3.17e-01 86.8% 38.5%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.54 43.0 4.10e-01 95.6% 74.4%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.53 37.0 3.30e-01 73.5% 95.1%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 43.0 4.06e-01 95.6% 82.8%
1dpgA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 44.0 3.33e-01 97.1% 65.1%
3ebbA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.50 38.0 2.66e-01 85.3% 22.3%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5060704 371.1.1.5 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › DUF1353 0.80 71.0 5.94e-01 95.6% 60.9%
3218544 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.77 67.0 6.35e-01 95.6% 93.8%
4145773 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.76 57.0 6.20e-01 80.9% 98.2%
4033612 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.75 52.0 5.95e-01 86.8% 100.0%
4348094 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.73 55.0 5.05e-01 80.9% 65.6%
5064030 182.1.3.0 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.73 57.0 5.12e-01 85.3% 63.2%
4479932 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.71 55.0 5.01e-01 83.8% 66.7%
5043220 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.70 54.0 5.03e-01 82.4% 87.1%
3171901 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.70 54.0 4.82e-01 82.4% 80.0%
4074434 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.69 54.0 5.13e-01 83.8% 78.8%
3835982 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.69 53.0 4.73e-01 82.4% 74.7%
4599915 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.69 56.0 5.73e-01 92.6% 93.8%
4118498 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.68 53.0 4.94e-01 83.8% 69.4%
5014896 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 57.0 4.30e-01 94.1% 52.9%
3964169 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.67 52.0 4.74e-01 83.8% 71.1%
5018170 7575.1.1.0 a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.67 58.0 4.46e-01 98.5% 56.1%
4031396 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.66 51.0 4.43e-01 83.8% 62.9%
3789554 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.66 56.0 5.15e-01 97.1% 86.7%
4987104 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.65 51.0 4.57e-01 86.8% 89.8%
3415231 3745.1.1.1 alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.61 50.0 3.04e-01 92.6% 67.5%
2325180 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.61 53.0 4.61e-01 97.1% 81.7%
5068709 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.60 49.0 4.59e-01 94.1% 79.8%
3814803 4133.1.1.1 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.60 47.0 4.52e-01 88.2% 78.8%
3786647 592.6.1.1 alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.59 48.0 4.62e-01 100.0% 78.8%
3701004 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.58 46.0 4.36e-01 91.2% 75.3%
3437796 101.1.11.136 alpha arrays › HTH › HTH › Ribbon-helix-helix › PF30992 0.57 37.0 4.10e-01 77.9% 90.0%
4017640 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 42.0 3.69e-01 82.4% 77.8%
3834278 4133.1.1.1 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.56 45.0 4.56e-01 92.6% 93.8%
3946046 101.1.2.52 alpha arrays › HTH › HTH › winged helix domain › KicB 0.55 42.0 4.17e-01 89.7% 88.0%
3885749 101.1.17.2 alpha arrays › HTH › HTH › FF domain › FF 0.54 41.0 4.01e-01 97.1% 78.7%
4971615 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.52 46.0 3.20e-01 100.0% 32.0%