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KT001914.1__AKU43613.1__CPT_Seuss87__00087

Bact-Vir

KT001914.1__AKU43613.1__CPT_Seuss87__00087

Identity

Accession:
KT001914 ↗
Kingdom:
phage

Quality

56.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Seussvirus› Caulobacter_phage_Seuss

TaxID: 1675601

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-200
PDB
Domain cluster: rep: IMGVR_UViG_3300039190_000305-3300039190-Ga0399989_003201_3_1937__D82-97_167-336
D2 high residues 222-330
PDB
Domain cluster: rep: DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00035__D226-373
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.64 41.0 4.54e-01 97.2% 80.5%
4ipeB02 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.63 57.0 4.98e-01 100.0% 86.1%
1wrdA00 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 37.0 3.92e-01 100.0% 72.4%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.56 44.0 3.98e-01 100.0% 62.1%
8a0rA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 37.0 3.46e-01 71.6% 65.4%
1s5jA03 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.52 39.0 3.46e-01 77.1% 68.8%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.51 37.0 3.83e-01 100.0% 79.4%
2gsqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 38.0 3.82e-01 100.0% 78.7%
2oh3A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.50 45.0 4.15e-01 100.0% 85.4%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017955 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.72 60.0 5.59e-01 89.0% 91.9%
3959009 601.48.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain 0.65 34.0 4.27e-01 89.0% 84.6%
3557551 212.1.1.24 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.65 52.0 4.93e-01 92.7% 73.1%
3695685 212.1.1.43 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DUF3684 0.63 57.0 4.15e-01 100.0% 45.1%
3509490 231.1.1.3 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_1, MoCoBD_2 0.55 42.0 2.60e-01 80.7% 55.7%
3227959 630.1.1.0 ↗ a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain 0.54 49.0 4.52e-01 100.0% 87.1%
5012084 304.48.1.3 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.54 40.0 3.15e-01 77.1% 72.9%
4533897 101.1.2.508 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25872 0.52 42.0 3.79e-01 87.2% 82.0%
3719120 603.1.1.66 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE_C 0.52 39.0 3.25e-01 98.2% 44.6%
3700672 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.52 39.0 3.88e-01 98.2% 75.7%
D3 high residues 389-434_468-514
PDB
D4 medium residues 567-682
PDB