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KT070867.1__AKQ08419.1__PBC2_104__00104

Bact-Vir

KT070867.1__AKQ08419.1__PBC2_104__00104

Identity

Accession:
KT070867 ↗
Kingdom:
phage

Quality

86.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Haetaevirus› Bacillus_phage_PBC2

TaxID: 1675029

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-70
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.85 63.0 6.92e-01 100.0% 94.3%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.83 65.0 6.99e-01 100.0% 98.1%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 60.0 6.05e-01 100.0% 77.8%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 60.0 5.62e-01 100.0% 64.9%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.79 56.0 5.27e-01 100.0% 62.3%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 56.0 5.77e-01 100.0% 80.0%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 58.0 6.08e-01 100.0% 89.5%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 57.0 5.84e-01 100.0% 85.5%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.72 59.0 5.17e-01 100.0% 60.0%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 58.0 5.50e-01 100.0% 76.0%
4rmoA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.66 57.0 4.39e-01 100.0% 64.3%
2wacA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 49.0 4.02e-01 84.4% 69.8%
4qmgC01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 50.0 3.80e-01 85.9% 62.9%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 54.0 5.43e-01 100.0% 93.8%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.63 52.0 3.67e-01 100.0% 29.1%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 5.31e-01 100.0% 91.2%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 50.0 5.08e-01 100.0% 92.1%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.61 53.0 4.92e-01 100.0% 77.1%
5j39A01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 45.0 3.75e-01 84.4% 92.1%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.60 52.0 4.94e-01 100.0% 81.6%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 53.0 5.23e-01 100.0% 98.5%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.60 51.0 5.18e-01 100.0% 98.4%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 49.0 4.52e-01 100.0% 76.2%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 48.0 4.62e-01 100.0% 89.2%
2eyzA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 40.0 3.64e-01 89.1% 54.9%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.54e-01 92.2% 79.4%
3dlbB03 2.170.260.50 Mainly Beta › Beta Complex › paz domain › 0.54 47.0 4.32e-01 100.0% 85.1%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 43.0 3.57e-01 96.9% 86.0%
1x31B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 41.0 2.88e-01 95.3% 62.3%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4027263 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.83 62.0 4.91e-01 100.0% 41.7%
598 4.1.1.68 ↗ beta barrels › SH3 › SH3 › SH3 › YorP 0.83 65.0 6.25e-01 100.0% 74.6%
4956443 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 60.0 6.16e-01 100.0% 83.3%
5039120 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 48.0 5.60e-01 78.1% 86.7%
4208181 4.1.1.70 ↗ beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.80 67.0 6.74e-01 100.0% 89.2%
3247995 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.79 55.0 5.38e-01 100.0% 67.1%
4888491 4.1.1.73 ↗ beta barrels › SH3 › SH3 › SH3 › Cul7 0.78 53.0 5.64e-01 87.5% 78.9%
1821014 4.1.1.70 ↗ beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.77 64.0 6.47e-01 100.0% 90.6%
3769507 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.74 53.0 5.21e-01 100.0% 70.0%
3214474 4.1.1.390 ↗ beta barrels › SH3 › SH3 › SH3 › PF29855 0.72 57.0 4.93e-01 100.0% 55.0%
3620357 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.71 54.0 4.39e-01 82.8% 70.8%
4138935 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.70 64.0 6.09e-01 100.0% 88.0%
3482676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 56.0 5.77e-01 100.0% 95.0%
3939132 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 56.0 4.86e-01 100.0% 58.0%
3659671 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.68 56.0 5.47e-01 100.0% 81.4%
3398298 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 54.0 4.99e-01 96.9% 68.8%
3486189 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.70e-01 100.0% 96.7%
157818 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 55.0 4.89e-01 100.0% 62.6%
3925642 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 54.0 4.67e-01 100.0% 58.0%
3914833 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 52.0 5.09e-01 100.0% 80.0%
3879755 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.65 60.0 5.04e-01 100.0% 62.9%
3758536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 4.97e-01 100.0% 77.1%
3503332 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.76e-01 98.4% 98.5%
3768347 4.1.1.230 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7030 0.65 53.0 5.37e-01 100.0% 89.2%
3554994 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 52.0 4.66e-01 100.0% 62.9%
3879132 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 56.0 5.30e-01 100.0% 81.3%
3514345 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 55.0 5.57e-01 100.0% 95.4%
3270256 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 51.0 5.26e-01 100.0% 94.9%
3708644 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 57.0 4.71e-01 100.0% 65.2%
3851361 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.64 58.0 4.86e-01 100.0% 64.8%
4021478 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.63e-01 100.0% 65.9%
3786978 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 56.0 5.51e-01 100.0% 95.7%
3500084 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 5.38e-01 100.0% 90.0%
4101476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.87e-01 100.0% 76.0%
3774692 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.62 50.0 4.70e-01 100.0% 72.5%
3773104 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.23e-01 100.0% 64.4%
3475429 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 54.0 5.26e-01 100.0% 92.9%
3625002 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.61 54.0 3.50e-01 100.0% 24.8%
3931715 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 53.0 4.58e-01 98.4% 96.0%
3624228 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 54.0 5.14e-01 100.0% 94.7%
5065570 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.59 50.0 4.66e-01 100.0% 77.6%
3839852 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.59 52.0 4.94e-01 100.0% 86.7%
5001481 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.59 51.0 4.86e-01 100.0% 86.7%
3315471 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.58 44.0 4.09e-01 100.0% 64.7%
4927673 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 41.0 3.90e-01 76.6% 88.7%
3594811 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 50.0 5.05e-01 100.0% 98.5%
5078626 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.57 49.0 4.73e-01 100.0% 86.5%
D2 medium residues 79-188
PDB
Domain cluster: rep: MH606185.1__AXH71067.1__BSP38_025__00025__D2-79
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.51 28.0 3.69e-01 74.5% 100.0%
3s95A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 28.0 3.07e-01 75.5% 63.6%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3607721 11.8.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.56 39.0 3.26e-01 72.7% 58.4%
4268621 320.6.1.1 ↗ a+b two layers › R3H domain-like › Cysteine methyltransferase effector NleE › Cysteine methyltransferase effector NleE › NleE 0.53 40.0 3.36e-01 81.8% 93.3%
4680920 235.1.1.10 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase 0.51 35.0 3.15e-01 99.1% 51.0%