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KT070868.1__AKQ08652.1__PBC5_086__00086
Bact-VirKT070868.1__AKQ08652.1__PBC5_086__00086
Identity
- Accession:
- KT070868 ↗
- Kingdom:
- phage
Quality
93.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-66
Domain cluster:
rep: IMGVR_UViG_3300011438_000020-3300011438-Ga0137451_100004559__D104-162
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.67 | 58.0 | 5.15e-01 | 100.0% | 73.5% |
| 3laaA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.65 | 35.0 | 2.46e-01 | 83.9% | 17.8% |
| 3mhsA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 52.0 | 4.07e-01 | 100.0% | 46.5% |
| 1bi0A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.57 | 38.0 | 3.63e-01 | 78.6% | 59.1% |
| 2wdoA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.55 | 41.0 | 3.23e-01 | 96.4% | 37.4% |
| 4zasA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 46.0 | 3.64e-01 | 96.4% | 93.2% |
| 5wm1A02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.53 | 40.0 | 3.19e-01 | 100.0% | 41.3% |
| 2xqnT01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.53 | 32.0 | 3.13e-01 | 75.0% | 53.2% |
| 2o6yA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.53 | 46.0 | 3.16e-01 | 98.2% | 82.1% |
| 6jgwA01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.51 | 37.0 | 2.89e-01 | 85.7% | 34.7% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5080086 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.66 | 55.0 | 4.89e-01 | 92.9% | 71.2% |
| 4943720 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.64 | 49.0 | 3.87e-01 | 85.7% | 41.6% |
| 1507759 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.60 | 51.0 | 3.95e-01 | 100.0% | 46.3% |
| 5045290 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.60 | 39.0 | 2.65e-01 | 82.1% | 19.5% |
| 4440681 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.58 | 46.0 | 3.38e-01 | 89.3% | 59.7% |
| 4109359 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.54 | 46.0 | 3.31e-01 | 94.6% | 74.4% |
| 4980029 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 43.0 | 3.50e-01 | 85.7% | 98.0% |
| 4067645 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.53 | 46.0 | 3.28e-01 | 96.4% | 72.6% |
| 3581822 | 377.1.1.10 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ArfGap | 0.52 | 37.0 | 3.24e-01 | 76.8% | 78.9% |
| 4156850 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.52 | 44.0 | 3.14e-01 | 94.6% | 73.3% |
| 3838727 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.51 | 42.0 | 3.27e-01 | 96.4% | 41.5% |
| 4637603 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.51 | 43.0 | 3.11e-01 | 94.6% | 73.1% |
| 4237018 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.50 | 44.0 | 3.18e-01 | 98.2% | 73.1% |
D2
high
residues 70-125
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6tmfT00 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.71 | 47.0 | 4.50e-01 | 75.0% | 59.4% |
| 5l3wA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.65 | 56.0 | 4.92e-01 | 98.2% | 73.8% |
| 1e1dA02 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.59 | 53.0 | 4.65e-01 | 100.0% | 85.7% |
| 2ahmG01 | 6.10.250.2820 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.58 | 46.0 | 3.74e-01 | 83.9% | 63.6% |
| 1e6cA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 44.0 | 3.11e-01 | 83.9% | 38.2% |
| 1gd5A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.57 | 46.0 | 3.65e-01 | 94.6% | 66.2% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.57 | 49.0 | 4.20e-01 | 96.4% | 75.3% |
| 1ac5A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 48.0 | 2.78e-01 | 92.9% | 18.6% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 42.0 | 3.52e-01 | 98.2% | 48.9% |
| 1c20A00 | 1.10.150.60 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain | 0.56 | 45.0 | 3.65e-01 | 100.0% | 82.0% |
| 3lqhA02 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.55 | 48.0 | 3.97e-01 | 100.0% | 61.3% |
| 3f2bA05 | 6.10.50.10 | Special › Helix non-globular › Insulin-like, subunit E › | 0.55 | 36.0 | 3.81e-01 | 71.4% | 77.1% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.55 | 42.0 | 3.94e-01 | 80.4% | 85.1% |
| 2ex3B02 | 1.20.1270.230 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › DNA terminal protein Gp3, priming domain | 0.55 | 48.0 | 4.29e-01 | 100.0% | 75.3% |
| 8d3mA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.55 | 42.0 | 2.90e-01 | 92.9% | 43.8% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 48.0 | 4.21e-01 | 100.0% | 80.0% |
| 8e9gK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 45.0 | 3.83e-01 | 92.9% | 81.3% |
| 6lo8F01 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.53 | 40.0 | 3.74e-01 | 80.4% | 73.9% |