Back to structures

KT160311.1__AKU42589.1__X__00008

Bact-Vir

KT160311.1__AKU42589.1__X__00008

Identity

Accession:
KT160311 ↗
Kingdom:
phage

Quality

78.9 mean pLDDT

Taxonomy

TaxID: 1673892

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-44_107-137
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6lbrA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 48.0 3.56e-01 100.0% 69.0%
D2 high residues 49-100
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m0wB05 3.30.1490.50 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain 0.59 47.0 4.57e-01 94.2% 95.0%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.54 44.0 2.84e-01 100.0% 31.2%
3l2pA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.53 41.0 3.83e-01 94.2% 90.1%
1vkmA00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.52 40.0 2.65e-01 94.2% 33.9%
3uyjA00 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.51 38.0 2.60e-01 86.5% 37.0%
4wz2C00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 36.0 3.24e-01 75.0% 68.9%
4q0mA01 3.40.50.1170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › L-asparaginase, N-terminal domain 0.51 36.0 2.50e-01 76.9% 69.8%
4kdiD00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 41.0 3.71e-01 98.1% 65.3%
2m13A00 4.10.640.40 Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 › Cytoplasmic polyadenylation element-binding protein, ZZ domain 0.50 34.0 3.25e-01 73.1% 56.9%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.50 39.0 3.51e-01 92.3% 92.4%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4169550 1056.1.1.1 a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.62 48.0 3.59e-01 88.5% 58.6%
4994376 3457.1.1.3 alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II 0.58 46.0 3.10e-01 96.2% 25.8%
3789608 2006.1.3.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.57 40.0 2.57e-01 75.0% 14.2%
3213306 2006.1.3.21 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOPRIM_C 0.56 39.0 2.56e-01 75.0% 14.4%
4105184 221.1.4.3 a+b two layers › beta-Grasp › Ubiquitin-related › Nqo1 middle domain-like › SLBB_2 0.55 44.0 3.77e-01 98.1% 59.0%
5036647 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 41.0 3.84e-01 94.2% 88.6%
5062217 4012.1.1.0 a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.52 36.0 3.56e-01 75.0% 67.3%
3993054 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.52 36.0 3.62e-01 75.0% 70.9%
3599863 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 39.0 3.40e-01 92.3% 85.6%