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KT206225.1__ALA48145.1__X__00032

Bact-Vir

KT206225.1__ALA48145.1__X__00032

Identity

Accession:
KT206225 ↗
Kingdom:
phage

Quality

83.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-81
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 47.0 4.70e-01 100.0% 66.7%
3ku7A00 3.30.1070.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › Cell division topological specificity factor MinE 0.68 47.0 5.19e-01 98.7% 91.8%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.65 52.0 4.92e-01 100.0% 72.3%
4a2aA02 3.30.1490.110 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.64 58.0 5.61e-01 100.0% 89.7%
2axyA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.64 44.0 4.55e-01 98.7% 76.4%
4d6gA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.63 40.0 3.33e-01 100.0% 36.9%
1ao7B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 45.0 4.16e-01 100.0% 58.0%
4v19W00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.63 55.0 4.29e-01 97.4% 66.3%
5x8tT00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.62 55.0 4.49e-01 98.7% 76.4%
4n2oA00 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 51.0 3.82e-01 100.0% 36.4%
1y14D01 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.61 48.0 4.97e-01 100.0% 91.8%
7d58G01 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.61 50.0 5.13e-01 100.0% 97.3%
6urtA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 49.0 4.70e-01 100.0% 77.3%
3q2uA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.60 53.0 3.99e-01 100.0% 44.6%
4pbdA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 52.0 4.72e-01 100.0% 71.6%
6u6pA01 3.30.1070.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › Cell division topological specificity factor MinE 0.60 44.0 4.45e-01 96.1% 78.2%
6qdws00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.59 50.0 4.48e-01 94.8% 100.0%
1fp5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 42.0 3.90e-01 100.0% 58.0%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 42.0 4.00e-01 100.0% 63.3%
3gqcC04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 51.0 4.44e-01 98.7% 97.5%
1xcjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 48.0 3.53e-01 98.7% 31.9%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 44.0 4.10e-01 100.0% 64.6%
3lmbA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 45.0 3.54e-01 84.4% 68.8%
3ayhB01 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.56 46.0 4.67e-01 100.0% 93.7%
3i4hX01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 49.0 4.19e-01 100.0% 75.0%
2gvhC01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 44.0 3.67e-01 85.7% 76.5%
2i0kA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.56 48.0 3.38e-01 100.0% 36.2%
4hvzA02 3.30.70.2970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 0.55 48.0 4.33e-01 100.0% 76.8%
3vaxA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 48.0 4.56e-01 98.7% 100.0%
2b78A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 41.0 3.06e-01 96.1% 29.8%
2bzgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 42.0 3.09e-01 100.0% 28.8%
2omlA02 3.30.70.1560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif 0.55 44.0 4.07e-01 100.0% 67.6%
2ipiA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.54 46.0 3.16e-01 100.0% 28.2%
2ebeA00 3.30.70.2290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF3208) 0.54 46.0 4.22e-01 100.0% 70.8%
4tpvA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.54 47.0 3.63e-01 98.7% 42.3%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.54 46.0 4.26e-01 100.0% 75.0%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 48.0 4.35e-01 100.0% 75.2%
3pfeA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 47.0 3.98e-01 100.0% 76.2%
3mjgX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 48.0 4.36e-01 100.0% 82.2%
1rgxA02 2.60.40.4230 Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain 0.53 37.0 4.04e-01 98.7% 89.1%
1c8uA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 45.0 3.95e-01 93.5% 78.3%
5k8mA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 46.0 3.88e-01 100.0% 77.1%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 4.04e-01 100.0% 73.0%
1l0oA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 42.0 3.56e-01 94.8% 97.2%
3rjaA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.51 45.0 3.23e-01 100.0% 36.2%
1yb2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 38.0 2.79e-01 98.7% 27.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4094675 812.1.1.1 a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE 0.71 54.0 5.30e-01 100.0% 74.1%
2989506 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.68 60.0 4.05e-01 100.0% 70.5%
2989340 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.67 57.0 3.84e-01 98.7% 66.0%
4370875 306.7.1.1 a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.66 59.0 4.99e-01 100.0% 89.2%
3731186 872.1.1.0 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.66 53.0 5.48e-01 98.7% 95.7%
3721039 872.1.1.0 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.65 52.0 5.45e-01 98.7% 97.1%
3365211 304.39.1.2 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Msl2-3_C 0.65 53.0 5.39e-01 100.0% 92.0%
3605765 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 56.0 5.01e-01 100.0% 77.3%
2755609 218.2.1.1 a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.63 55.0 4.30e-01 97.4% 66.3%
4994786 872.1.1.1 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N 0.63 52.0 5.28e-01 97.4% 94.7%
3232310 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 47.0 4.42e-01 100.0% 65.3%
4947235 218.2.1.1 a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.62 54.0 4.30e-01 97.4% 89.0%
3820425 3758.1.1.105 alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Msl2-3_C 0.61 51.0 4.60e-01 100.0% 67.6%
3921499 304.47.1.0 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.61 54.0 4.58e-01 100.0% 75.4%
3583072 304.34.1.0 a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases 0.61 51.0 4.58e-01 100.0% 65.2%
5000638 872.1.1.0 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.60 51.0 5.05e-01 100.0% 92.5%
3305756 304.39.1.2 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Msl2-3_C 0.60 50.0 4.48e-01 100.0% 64.5%
3959517 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.60 52.0 5.19e-01 96.1% 97.5%
3925984 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 53.0 4.59e-01 100.0% 82.4%
4994537 218.2.1.1 a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.58 50.0 3.81e-01 96.1% 77.8%
3627282 872.3.1.0 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.58 50.0 4.67e-01 98.7% 76.0%
3784277 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.57 43.0 3.03e-01 100.0% 24.8%
4928893 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.57 50.0 4.14e-01 100.0% 54.5%
4136515 310.3.1.23 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › RP854 0.57 47.0 3.74e-01 100.0% 43.8%
3210385 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.57 51.0 4.31e-01 100.0% 60.9%
4091380 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.57 50.0 4.46e-01 100.0% 78.2%
3623132 304.20.1.2 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 0.56 50.0 3.89e-01 100.0% 55.9%
3594807 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 51.0 3.54e-01 100.0% 43.3%
4941255 218.2.1.1 a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.56 47.0 3.93e-01 97.4% 93.1%
3662024 304.30.1.1 a+b two layers › Alpha-beta plaits › D-ribose-5-phosphate isomerase (RpiA), lid domain › D-ribose-5-phosphate isomerase (RpiA), lid domain › Rib_5-P_isom_A 0.56 46.0 4.39e-01 100.0% 77.8%
3198960 304.20.1.2 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 0.55 49.0 3.89e-01 100.0% 81.2%
5052711 304.55.2.0 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like 0.55 49.0 4.04e-01 100.0% 73.6%
4023304 241.6.1.0 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.55 48.0 3.73e-01 100.0% 46.9%
356037 304.4.1.13 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › SOR 0.54 49.0 3.93e-01 100.0% 55.7%
3309819 304.112.1.3 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoN 0.54 36.0 3.41e-01 100.0% 54.0%
4966380 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.54 48.0 3.30e-01 100.0% 43.0%
5036749 304.51.1.12 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6_N 0.54 46.0 4.02e-01 100.0% 73.6%
3621732 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.54 48.0 4.33e-01 100.0% 77.1%
3928940 241.6.1.1 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › P34-Arc 0.53 47.0 3.72e-01 100.0% 49.1%
3198938 2003.1.5.79 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.53 45.0 3.06e-01 93.5% 36.6%
4322566 304.44.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.53 47.0 4.42e-01 100.0% 88.4%
3688004 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.53 44.0 3.95e-01 98.7% 66.4%
4943947 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.53 40.0 2.53e-01 98.7% 15.7%
3955256 323.1.1.15 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › WS_DGAT_C 0.52 44.0 3.22e-01 100.0% 78.7%
3971017 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.52 45.0 4.07e-01 100.0% 70.9%
5041672 304.44.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.52 46.0 4.21e-01 100.0% 75.7%
4405891 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.52 38.0 2.71e-01 77.9% 46.5%
5051997 886.1.1.3 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Cass2 0.52 44.0 3.47e-01 100.0% 44.4%
3718206 304.4.1.14 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.52 42.0 3.85e-01 100.0% 65.5%
3738924 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.51 41.0 3.94e-01 97.4% 74.4%
4133168 304.44.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › PriA_C 0.51 40.0 3.67e-01 100.0% 64.8%
3220442 206.1.1.28 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Haspin_kinase 0.51 43.0 3.36e-01 100.0% 65.3%
3595511 304.20.1.0 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain 0.51 43.0 3.53e-01 100.0% 60.0%
3917076 11.1.1.909 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Gpi16 0.51 45.0 3.24e-01 100.0% 68.8%
1030952 2003.1.5.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 0.51 38.0 2.99e-01 98.7% 35.8%
3346945 4955.1.1.1 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_7 0.51 44.0 3.77e-01 100.0% 69.2%
3750685 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 46.0 3.90e-01 100.0% 61.6%
3609026 304.20.1.0 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain 0.50 43.0 3.58e-01 100.0% 62.8%
3436141 2003.1.5.30 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 0.50 43.0 3.31e-01 100.0% 63.5%