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KT221034.1__ALF00188.1__SF3_570__00057

Bact-Vir

KT221034.1__ALF00188.1__SF3_570__00057

Identity

Accession:
KT221034 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Siftrevirus› Streptomyces_phage_SF3

TaxID: 1690818

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 166-207
PDB
Domain cluster: rep: NC_053210.1__YP_010001435.1__J1597_gp55__00055__D7-55
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24623.3 best Phage_zn_bind_8 33.5 4.00e-08 100.0% 66.7%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2drpA02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.73 29.0 3.48e-01 100.0% 55.2%
2m9aA03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.68 29.0 3.28e-01 100.0% 50.0%
4ocqA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.55 40.0 2.59e-01 85.7% 67.5%
3nw0A03 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 36.0 3.37e-01 85.7% 51.7%
2nabA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.51 30.0 3.33e-01 95.2% 75.0%
1wjpA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.50 31.0 3.36e-01 97.6% 71.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3393045 386.1.1.24 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_4 0.80 31.0 3.76e-01 100.0% 57.1%
3738423 70.3.1.11 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET, zf-MYND 0.51 38.0 2.42e-01 100.0% 14.0%
3522436 327.5.1.5 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C_3 0.51 40.0 2.81e-01 90.5% 32.3%
3488604 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 35.0 3.69e-01 92.9% 88.6%
167550 386.1.1.18 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz 0.50 31.0 3.37e-01 97.6% 76.7%
D2 medium residues 3-79
PDB
Domain cluster: rep: MH651168.1__AXQ62964.1__SEA_ASHERTHEMAN_57__00057__D3-84
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1no1A00 1.10.8.200 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Replisome organizer (g39p helicase loader/inhibitor protein) 0.90 72.0 7.77e-01 88.3% 98.5%
2qz4A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 54.0 5.69e-01 90.9% 95.7%
1jqjD03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.67 54.0 5.29e-01 98.7% 80.2%
4akgA06 1.10.8.710 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain 0.66 57.0 5.18e-01 98.7% 80.4%
3mkzN00 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 48.0 4.36e-01 92.2% 62.7%
1fx0A03 1.20.150.20 Mainly Alpha › Up-down Bundle › Lysin › ATP synthase alpha/beta chain, C-terminal domain 0.59 44.0 3.79e-01 81.8% 51.2%
1vfpB02 1.20.1110.10 Mainly Alpha › Up-down Bundle › Calcium-transporting ATPase, transmembrane domain › Calcium-transporting ATPase, transmembrane domain 0.59 50.0 3.21e-01 100.0% 58.5%
1z6mA02 1.10.1200.90 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › DsbA-like domain 0.57 37.0 3.98e-01 80.5% 82.0%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.56 38.0 4.03e-01 79.2% 80.6%
4nxtA01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.56 47.0 3.91e-01 96.1% 73.1%
3of4A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.54 37.0 2.81e-01 71.4% 27.5%
7p2yC03 1.20.150.20 Mainly Alpha › Up-down Bundle › Lysin › ATP synthase alpha/beta chain, C-terminal domain 0.53 43.0 3.76e-01 93.5% 66.9%
4zpxA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 41.0 4.00e-01 93.5% 88.0%
2p0nA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.52 35.0 2.84e-01 70.1% 95.0%
1w3iA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 42.0 2.88e-01 92.2% 39.9%
1u61A00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.51 38.0 3.33e-01 81.8% 89.0%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1556747 148.1.3.113 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_TRIP13_C 0.73 63.0 5.16e-01 96.1% 70.4%
5077706 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 61.0 5.72e-01 100.0% 88.0%
4027192 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 61.0 5.63e-01 100.0% 89.0%
4950231 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 57.0 5.34e-01 98.7% 81.1%
3704812 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 49.0 4.97e-01 92.2% 86.7%
3609318 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.64 56.0 5.13e-01 100.0% 88.6%
4209656 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 56.0 5.08e-01 100.0% 92.4%
3691326 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 45.0 4.63e-01 93.5% 81.3%
3970860 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 49.0 4.90e-01 92.2% 92.5%
4016526 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 47.0 4.87e-01 90.9% 94.3%
3594407 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 48.0 4.68e-01 93.5% 98.8%
3835056 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.57 43.0 3.80e-01 83.1% 62.7%
4983621 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.57 40.0 3.48e-01 74.0% 71.7%
4018722 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 47.0 4.75e-01 98.7% 95.0%
4013606 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 43.0 4.49e-01 90.9% 94.3%
3721575 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 47.0 4.62e-01 97.4% 89.4%
3551458 103.1.1.3 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N 0.55 43.0 4.26e-01 85.7% 85.0%
3822810 1128.1.1.13 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › PF30094 0.55 40.0 3.71e-01 77.9% 74.0%
3661506 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 45.0 4.55e-01 100.0% 95.0%
4988064 4009.1.1.1 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.54 36.0 3.78e-01 77.9% 77.1%
3545767 101.8.1.2 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.54 42.0 3.32e-01 88.3% 73.6%
3279122 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.53 45.0 4.01e-01 93.5% 88.2%
3999659 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.53 39.0 4.01e-01 81.8% 98.7%
4959600 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 41.0 4.00e-01 87.0% 85.9%
3725 601.3.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.52 33.0 3.05e-01 72.7% 48.1%
3894479 5057.1.1.13 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Strabismus 0.51 42.0 3.63e-01 97.4% 87.4%
3621508 5050.1.1.31 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › SLC52_ribofla_tr 0.50 40.0 3.18e-01 92.2% 56.7%
D3 medium residues 82-117
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h9nC00 1.20.58.2170 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 52.0 3.23e-01 94.4% 19.0%