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KT240186.1__ALA46475.1__BF2512_18__00018

Bact-Vir

KT240186.1__ALA46475.1__BF2512_18__00018

Identity

Accession:
KT240186 ↗
Kingdom:
phage

Quality

75.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Stompvirus› Dickeya_phage_BF25/12

TaxID: 1698708

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-62
PDB
Domain cluster: rep: ON529852.1__USN14370.1__KABACHOK_05570__00533__D100-157
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.85 71.0 6.80e-01 100.0% 79.0%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.84 69.0 6.77e-01 100.0% 84.5%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.83 66.0 6.25e-01 100.0% 72.3%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 69.0 6.10e-01 100.0% 64.9%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 72.0 7.31e-01 100.0% 98.1%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 72.0 6.43e-01 100.0% 71.1%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.80 73.0 5.94e-01 100.0% 65.7%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 69.0 6.60e-01 100.0% 83.9%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 67.0 5.45e-01 100.0% 51.0%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.78 62.0 6.27e-01 100.0% 87.0%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.78 71.0 5.05e-01 100.0% 49.7%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 64.0 6.66e-01 100.0% 100.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 61.0 5.96e-01 98.2% 79.7%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 69.0 6.59e-01 100.0% 92.2%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 68.0 5.23e-01 100.0% 47.9%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 68.0 6.62e-01 100.0% 95.0%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 68.0 6.49e-01 100.0% 89.1%
4epcA01 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.75 66.0 5.82e-01 100.0% 81.5%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.74 67.0 6.40e-01 100.0% 88.9%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.73 59.0 5.80e-01 100.0% 81.7%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.73 66.0 6.04e-01 100.0% 93.0%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.73 67.0 4.82e-01 100.0% 51.7%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.73 66.0 4.77e-01 100.0% 50.0%
2gfuA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 64.0 4.83e-01 100.0% 42.5%
1sp4B00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.73 64.0 4.31e-01 100.0% 37.1%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 63.0 5.77e-01 100.0% 80.6%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 51.0 4.64e-01 76.4% 56.8%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 60.0 5.54e-01 100.0% 80.8%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.69 60.0 4.39e-01 100.0% 39.1%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 51.0 5.03e-01 100.0% 84.7%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.62 50.0 4.71e-01 90.9% 76.8%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.62 52.0 3.76e-01 100.0% 80.0%
2mhgA00 2.20.130.30 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › Protein of unknown function DUF2782 0.60 43.0 3.93e-01 96.4% 56.0%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 47.0 4.69e-01 94.5% 87.5%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 40.0 4.23e-01 70.9% 95.9%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 46.0 4.58e-01 94.5% 87.5%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 46.0 4.68e-01 94.5% 94.2%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.58 44.0 3.23e-01 89.1% 61.4%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 42.0 3.65e-01 81.8% 84.8%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 43.0 3.96e-01 87.3% 65.4%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 41.0 4.16e-01 90.9% 80.7%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.56 34.0 3.31e-01 100.0% 53.2%
5u25A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 45.0 3.65e-01 100.0% 96.7%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 45.0 3.30e-01 98.2% 44.0%
5ahoA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 37.0 2.67e-01 76.4% 62.3%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 40.0 4.09e-01 92.7% 94.1%
2k3dA00 3.10.450.130 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › folded 79 residue fragment of lin0334 like domains 0.53 43.0 3.85e-01 96.4% 80.5%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 3.54e-01 100.0% 95.1%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 3.39e-01 100.0% 97.6%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.51 40.0 4.02e-01 96.4% 89.8%
2wzoA01 3.30.160.360 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 42.0 3.30e-01 100.0% 60.9%
2fujA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 40.0 3.24e-01 92.7% 89.8%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3622425 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.86 73.0 5.53e-01 100.0% 41.7%
4170983 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 76.0 6.78e-01 100.0% 77.3%
4565130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 72.0 5.88e-01 100.0% 54.7%
3637508 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.82 69.0 6.54e-01 100.0% 78.5%
3419491 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 69.0 6.76e-01 100.0% 85.0%
3585492 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.81 74.0 5.78e-01 100.0% 57.3%
3995874 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 73.0 5.26e-01 100.0% 41.3%
3799904 4.1.1.315 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.81 73.0 4.32e-01 100.0% 15.7%
3585510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 73.0 6.22e-01 100.0% 72.9%
1117666 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.80 73.0 6.26e-01 100.0% 76.5%
3344796 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.80 69.0 5.98e-01 100.0% 62.7%
3742938 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.80 69.0 6.53e-01 100.0% 80.0%
4022025 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.80 69.0 4.93e-01 100.0% 35.2%
4091379 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 73.0 6.68e-01 100.0% 78.6%
4883261 4.1.1.76 ↗ beta barrels › SH3 › SH3 › SH3 › NdhO 0.80 71.0 5.90e-01 100.0% 74.7%
5034724 4.1.1.482 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4314 0.79 68.0 6.87e-01 94.5% 94.5%
3793656 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.79 66.0 4.81e-01 100.0% 34.5%
4024736 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.79 55.0 5.27e-01 74.5% 66.2%
3698280 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 70.0 5.67e-01 98.2% 56.0%
3930845 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.78 53.0 4.89e-01 76.4% 55.7%
3972820 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 70.0 6.14e-01 100.0% 82.5%
1567496 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.77 64.0 6.38e-01 100.0% 87.7%
3766659 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.77 65.0 6.33e-01 100.0% 83.3%
3224924 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.77 59.0 4.35e-01 85.5% 33.3%
3385654 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 67.0 5.21e-01 98.2% 64.2%
3218647 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 69.0 6.34e-01 100.0% 85.7%
3699995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 66.0 6.07e-01 100.0% 74.3%
3702154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 63.0 5.65e-01 100.0% 66.7%
3207081 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.76 68.0 6.45e-01 98.2% 93.8%
3959770 4.31.1.0 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 0.76 67.0 5.69e-01 100.0% 62.2%
3953109 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.76 66.0 5.57e-01 100.0% 58.9%
4545520 4.7.1.7 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.76 66.0 5.77e-01 100.0% 65.9%
3278698 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 67.0 5.42e-01 100.0% 81.9%
3946297 4.1.1.111 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.75 60.0 5.55e-01 100.0% 68.6%
4069543 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.75 66.0 5.96e-01 100.0% 72.0%
3936225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 67.0 6.19e-01 100.0% 81.4%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 66.0 6.44e-01 100.0% 90.0%
3924619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 66.0 5.03e-01 100.0% 44.2%
3591144 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 65.0 4.73e-01 98.2% 38.0%
3901117 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.74 67.0 4.58e-01 100.0% 30.6%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.74 65.0 5.44e-01 100.0% 57.9%
3876680 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.74 66.0 5.41e-01 100.0% 55.0%
5055039 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.73 64.0 4.78e-01 100.0% 42.1%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.73 66.0 5.91e-01 100.0% 81.3%
3740208 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.73 63.0 5.99e-01 100.0% 81.5%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.73 65.0 4.75e-01 100.0% 42.1%
165654 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.73 65.0 5.92e-01 100.0% 78.4%
3932484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 67.0 6.35e-01 100.0% 87.5%
3581817 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.73 65.0 6.13e-01 100.0% 81.5%
3616769 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.73 65.0 5.31e-01 100.0% 55.8%
4405469 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.72 62.0 5.24e-01 100.0% 62.1%
4542692 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 62.0 5.43e-01 100.0% 70.6%
3559960 2006.1.6.66 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.72 64.0 5.86e-01 100.0% 77.1%
3368864 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.72 65.0 6.12e-01 100.0% 83.1%
3633557 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.71 54.0 4.81e-01 90.9% 57.5%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.71 63.0 5.16e-01 100.0% 64.0%
5032454 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.71 60.0 4.57e-01 100.0% 40.8%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 61.0 4.91e-01 100.0% 51.8%
3639839 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.70 53.0 5.45e-01 90.9% 86.8%
5032809 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.70 57.0 4.37e-01 100.0% 39.2%
4250193 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.69 60.0 5.16e-01 100.0% 67.8%
3419158 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 61.0 5.79e-01 100.0% 86.2%
3689299 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 54.0 4.38e-01 92.7% 90.0%
3435006 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.66 59.0 5.58e-01 100.0% 86.2%
4338421 2.1.1.100 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.66 46.0 4.40e-01 74.5% 100.0%
4265943 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.66 57.0 3.61e-01 100.0% 19.3%
3166879 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 54.0 5.16e-01 100.0% 87.7%
4649112 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 52.0 4.96e-01 94.5% 93.8%
3737837 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 5.06e-01 100.0% 90.8%
5075523 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.61 46.0 2.98e-01 90.9% 16.3%
3786518 4.8.1.18 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Myosin_N 0.60 51.0 4.92e-01 98.2% 87.7%
4537528 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 53.0 4.91e-01 100.0% 88.6%
4985754 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 44.0 3.72e-01 80.0% 69.5%
4380962 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 45.0 3.67e-01 83.6% 62.9%
3636503 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.59 52.0 4.81e-01 100.0% 84.3%
3237428 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 48.0 2.95e-01 96.4% 26.4%
3410884 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.58 44.0 4.26e-01 96.4% 73.4%
3967111 3338.2.1.2 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.57 47.0 3.69e-01 96.4% 43.2%
5049620 304.106.1.0 ↗ a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 0.57 48.0 2.88e-01 96.4% 87.7%
3258441 234.3.1.0 ↗ a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.55 41.0 3.76e-01 100.0% 60.0%
3260945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 42.0 4.17e-01 100.0% 91.7%
4976682 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.51 37.0 2.24e-01 83.6% 36.9%
D2 high residues 73-132
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 57.0 4.54e-01 96.7% 86.8%
2d73A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 57.0 3.61e-01 100.0% 40.8%
4gw9A01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.62 54.0 3.67e-01 96.7% 74.9%
2g2cA00 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.62 51.0 3.85e-01 93.3% 40.4%
2qlzA02 6.10.250.2960 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 44.0 3.87e-01 75.0% 61.6%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 48.0 2.96e-01 86.7% 18.5%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 3.79e-01 90.0% 82.4%
3sluA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 42.0 3.23e-01 75.0% 45.3%
2uuxA01 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.59 35.0 4.21e-01 76.7% 100.0%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 47.0 2.82e-01 86.7% 16.3%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.58 49.0 3.65e-01 100.0% 83.5%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.57 50.0 3.64e-01 100.0% 82.5%
4nurA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.57 45.0 3.50e-01 86.7% 61.1%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 50.0 3.55e-01 100.0% 45.7%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.56 45.0 3.72e-01 90.0% 56.4%
3gdoA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 46.0 3.20e-01 90.0% 97.0%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.55 50.0 3.70e-01 100.0% 40.7%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 43.0 3.21e-01 86.7% 96.9%
2cfuA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.55 44.0 3.45e-01 86.7% 62.0%
7r8iA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 46.0 3.16e-01 95.0% 91.7%
4k2xB02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 39.0 3.58e-01 78.3% 67.1%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.54 45.0 3.73e-01 95.0% 51.4%
2zwaA02 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.54 47.0 2.98e-01 100.0% 24.8%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.54 46.0 4.30e-01 98.3% 87.2%
4axhA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.54 42.0 3.34e-01 86.7% 62.5%
3rc2A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 44.0 3.12e-01 90.0% 98.4%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 42.0 3.52e-01 86.7% 77.4%
3topA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 47.0 3.65e-01 100.0% 45.6%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.53 49.0 4.48e-01 100.0% 86.7%
2obdA01 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.53 48.0 3.05e-01 100.0% 56.2%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 35.0 2.62e-01 73.3% 46.9%
2qu8A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 47.0 3.20e-01 98.3% 41.2%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 43.0 3.50e-01 91.7% 98.1%
2bjfA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.51 41.0 2.70e-01 98.3% 85.5%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.51 38.0 3.42e-01 85.0% 74.4%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.51 37.0 3.82e-01 83.3% 87.7%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 43.0 2.84e-01 100.0% 26.1%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.50 40.0 3.10e-01 98.3% 40.3%
1w6kA01 6.20.120.20 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 29.0 3.14e-01 70.0% 68.0%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3688914 283.1.1.4 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › ThrE 0.76 50.0 3.71e-01 100.0% 29.3%
3706043 323.1.1.6 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf 0.76 50.0 3.58e-01 100.0% 25.6%
3593683 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.74 50.0 3.11e-01 100.0% 14.2%
3596422 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.69 48.0 2.79e-01 100.0% 8.9%
4408649 2484.1.1.41 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.68 50.0 3.32e-01 76.7% 32.0%
5026457 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.64 56.0 3.81e-01 96.7% 33.2%
3230176 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.63 45.0 2.84e-01 75.0% 69.7%
4355799 223.1.1.26 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_3 0.63 56.0 4.07e-01 100.0% 72.1%
5042626 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.62 49.0 3.42e-01 88.3% 90.2%
3940997 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 56.0 4.24e-01 100.0% 75.6%
4996269 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.60 47.0 3.29e-01 90.0% 36.9%
3722420 2008.1.1.143 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 0.60 40.0 3.03e-01 71.7% 42.5%
3653236 3347.1.1.0 ↗ beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 0.60 44.0 3.28e-01 80.0% 33.5%
3241195 2484.1.1.153 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1744 0.59 43.0 2.77e-01 78.3% 79.7%
3701386 7026.1.1.4 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › Chorein_N 0.59 53.0 3.40e-01 100.0% 57.1%
1907312 223.1.1.7 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.58 49.0 3.65e-01 100.0% 82.6%
5055279 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.58 50.0 3.50e-01 98.3% 92.2%
3905302 284.1.3.8 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › Fy-3 0.58 53.0 4.66e-01 100.0% 81.2%
3713627 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.58 46.0 2.93e-01 88.3% 28.0%
4974213 2484.1.1.77 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.58 47.0 3.28e-01 90.0% 96.9%
3857887 5094.1.1.11 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › Fy-3 0.58 52.0 4.82e-01 100.0% 92.0%
3561230 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 48.0 4.53e-01 100.0% 97.3%
5007973 268.1.1.1 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.57 43.0 3.54e-01 81.7% 71.1%
3992117 283.1.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.57 50.0 3.51e-01 96.7% 38.1%
3560901 601.19.1.20 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 0.57 52.0 4.82e-01 100.0% 92.0%
3236787 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.57 41.0 3.14e-01 75.0% 57.7%
3381414 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.57 50.0 3.72e-01 98.3% 58.1%
4960230 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.57 47.0 3.24e-01 90.0% 34.8%
4644747 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.57 43.0 4.00e-01 85.0% 96.2%
3740759 4099.1.1.3 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.57 36.0 3.66e-01 73.3% 65.0%
2999708 223.1.1.7 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.57 50.0 3.60e-01 100.0% 76.1%
3588182 9.16.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 0.57 40.0 3.32e-01 75.0% 80.0%
3350473 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 41.0 4.00e-01 81.7% 81.4%
3815146 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.56 44.0 2.83e-01 88.3% 20.7%
5058066 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.56 43.0 3.41e-01 80.0% 42.6%
4078246 9.4.1.1 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B 0.56 39.0 3.64e-01 73.3% 74.7%
5035011 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.56 41.0 2.77e-01 78.3% 73.2%
3261849 7026.1.1.14 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › BLTP3A_B 0.56 51.0 3.29e-01 100.0% 45.5%
4915813 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.56 44.0 2.93e-01 88.3% 24.2%
3545474 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.56 51.0 4.43e-01 100.0% 73.3%
4120507 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.55 39.0 3.43e-01 76.7% 65.3%
4991990 878.1.1.0 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 0.55 50.0 4.21e-01 100.0% 68.0%
3211176 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.55 45.0 2.95e-01 88.3% 35.7%
3517822 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.55 47.0 3.89e-01 100.0% 88.7%
3228484 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.55 42.0 2.70e-01 81.7% 28.2%
4350114 304.160.1.1 ↗ a+b two layers › Alpha-beta plaits › Gas vesicle protein GvpF › Gas vesicle protein GvpF › GvpL_GvpF 0.54 43.0 3.68e-01 96.7% 52.4%
2640297 808.1.1.1 ↗ a+b duplicates or obligate multimers › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › CoV_nucleocap 0.54 36.0 3.01e-01 70.0% 81.9%
3290074 213.5.1.1 ↗ a+b three layers › Nat/Ivy › AlkZ C-terminal domain › AlkZ C-terminal domain › AlkZ-like 0.54 47.0 4.00e-01 98.3% 88.0%
4027686 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.53 41.0 4.32e-01 85.0% 89.1%
3252808 1170.1.2.0 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) 0.53 42.0 3.98e-01 85.0% 94.3%
4027687 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.53 40.0 4.19e-01 83.3% 87.3%
4028791 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.53 40.0 4.18e-01 85.0% 87.3%
3998663 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 40.0 3.91e-01 90.0% 75.7%
3612082 330.16.1.3 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain › CEP19 0.53 48.0 4.33e-01 100.0% 88.7%
3482445 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 45.0 2.74e-01 100.0% 15.6%
5011027 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.52 43.0 3.09e-01 90.0% 65.7%
4954522 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.52 46.0 3.99e-01 98.3% 79.8%
3716046 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.52 48.0 2.76e-01 100.0% 38.4%
3688879 5084.5.3.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › DUF6603 0.52 38.0 2.25e-01 78.3% 21.7%
4363805 292.2.1.9 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_4 0.52 46.0 4.03e-01 100.0% 77.8%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.30e-01 78.3% 70.0%
1665018 298.1.1.6 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › G6PD_C 0.52 37.0 2.34e-01 75.0% 36.3%
4050578 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.51 39.0 3.04e-01 81.7% 64.0%
5038951 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 45.0 3.43e-01 100.0% 75.2%
3911145 223.7.1.1 ↗ a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like 0.51 44.0 3.44e-01 100.0% 97.9%
3401180 7026.1.1.13 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › Hobbit 0.51 44.0 2.92e-01 96.7% 51.0%