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KT321476.1__AKY02298.1__SEA_ZEENON_4__00004

Bact-Vir

KT321476.1__AKY02298.1__SEA_ZEENON_4__00004

Identity

Accession:
KT321476 ↗
Kingdom:
phage

Quality

90.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bixzunavirus› Mycobacterium_phage_Zeenon

TaxID: 1698253

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-107
PDB
Domain cluster: rep: CG_2015-01t_scaffold_23_prodigal-single.1__X__X__00049__D239-307
D2 medium residues 108-194_216-231
PDB
Domain cluster: rep: OR613483.1__WNT45779.1__SEA_PURDUEPETE_3__00003__D404-485
D3 medium residues 232-328
PDB
Domain cluster: rep: OM971648.1__UQJ95202.1__IANJMKHF_00296__00296__D1-80
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10127.16 best RlaP 49.9 5.00e-13 87.6% 40.6%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nsfA01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.69 53.0 4.46e-01 81.4% 56.6%
2uxwA01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.61 44.0 3.55e-01 75.3% 56.5%
2ew2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 43.0 3.88e-01 74.2% 97.0%
4fm3A00 1.20.1270.390 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 39.0 4.01e-01 71.1% 76.8%
2chnB03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.57 39.0 3.28e-01 71.1% 75.6%
4nleA02 1.10.275.60 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › 0.57 42.0 3.79e-01 77.3% 86.4%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 41.0 3.44e-01 76.3% 76.5%
2pejA00 1.10.1200.210 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX 0.53 44.0 4.26e-01 92.8% 89.0%
4gr6B00 1.10.1200.210 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX 0.52 43.0 4.20e-01 89.7% 87.6%
4pysA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 37.0 2.62e-01 78.4% 89.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3511563 192.29.1.143 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › CCDC28 0.64 44.0 4.34e-01 71.1% 97.1%
3573531 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.63 48.0 3.87e-01 82.5% 82.5%
3957583 103.4.1.29 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › ABC-3 0.62 50.0 4.21e-01 88.7% 59.4%
5025185 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.58 41.0 3.69e-01 73.2% 88.9%
3623144 3718.1.1.5 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › Meis_PKNOX_N 0.55 39.0 3.65e-01 72.2% 67.8%
4556484 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 37.0 3.38e-01 73.2% 80.8%
4973230 1079.1.1.0 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA 0.51 37.0 2.89e-01 76.3% 82.7%
4939077 1079.1.1.0 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA 0.51 36.0 2.82e-01 72.2% 90.2%
3801576 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.51 35.0 3.48e-01 70.1% 81.0%
3214190 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 35.0 3.40e-01 72.2% 91.8%
3480403 3361.1.1.0 ↗ alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 0.50 35.0 3.54e-01 73.2% 82.0%
3961349 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.50 41.0 2.89e-01 92.8% 32.7%