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KT337353.1__ALA47083.1__phiARI0460-2_1__00001

Bact-Vir

KT337353.1__ALA47083.1__phiARI0460-2_1__00001

Identity

Accession:
KT337353 ↗
Kingdom:
phage

Quality

94.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Spinunavirus› Streptococcus_phage_phiARI0460-2

TaxID: 1701825

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-71
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ivvA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 1.00 97.0 6.84e-01 100.0% 39.7%
3latA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.84 76.0 5.29e-01 100.0% 32.9%
3c2qA02 3.40.50.10690 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › putative lor/sdh protein like domains 0.54 46.0 3.25e-01 100.0% 93.8%
1a5aA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 41.0 2.87e-01 100.0% 23.5%
3dnfA02 3.40.50.11270 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 35.0 3.34e-01 71.0% 97.6%
2orwB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 39.0 3.27e-01 87.0% 78.7%
2b8tA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 37.0 3.07e-01 82.6% 74.1%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1914461 285.1.1.0 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like 1.00 97.0 6.85e-01 100.0% 39.7%
1904118 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.99 96.0 6.80e-01 100.0% 40.1%
3587007 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.93 86.0 6.12e-01 100.0% 37.6%
1902112 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.84 76.0 5.29e-01 100.0% 32.9%
D2 medium residues 104-218
PDB
Domain cluster: rep: pre3_saliva_scaffold_7_prodigal-single.1__X__X__00223__D539-660
Pfam (7)
AccessionNameScoreE-valueQ covHMM cov
PF19127.7 best Choline_bind_3 67.0 1.50e-18 40.0% 100.0%
PF19127.7 Choline_bind_3 36.0 7.70e-09 32.2% 78.7%
PF01473.27 Choline_bind_1 13.7 9.30e-02 18.3% 68.4%
PF01473.27 Choline_bind_1 27.5 3.90e-06 17.4% 94.7%
PF01473.27 Choline_bind_1 25.3 2.00e-05 17.4% 79.0%
PF01473.27 Choline_bind_1 27.0 5.50e-06 16.5% 100.0%
PF01473.27 Choline_bind_1 17.9 4.30e-03 11.3% 68.4%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2j8gA02 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.89 62.0 7.34e-01 73.9% 100.0%
3klkA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.86 73.0 6.39e-01 88.7% 65.8%
2g7cB01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.86 49.0 6.43e-01 82.6% 100.0%
2v05A01 2.10.270.20 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › 0.85 63.0 6.04e-01 75.7% 97.7%
2v05A02 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.85 79.0 6.82e-01 98.3% 85.8%
6jyxA01 2.10.270.20 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › 0.84 62.0 6.01e-01 75.7% 100.0%
7v1nA02 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.77 65.0 6.63e-01 88.7% 95.6%
2g7cA02 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.76 55.0 6.09e-01 73.9% 100.0%
2qj6A01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.74 60.0 5.77e-01 87.0% 81.8%
5ngyA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.74 59.0 6.21e-01 83.5% 98.1%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989167 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.98 78.0 8.37e-01 85.2% 93.0%
3987354 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.96 72.0 8.21e-01 83.5% 97.8%
3987219 702.1.1.9 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1, Choline_bind_2, Choline_bind_3 0.94 60.0 7.54e-01 71.3% 100.0%
369186 702.1.1.9 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1, Choline_bind_2, Choline_bind_3 0.91 63.0 7.44e-01 80.0% 98.8%
4287737 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.90 82.0 5.72e-01 94.8% 34.7%
4051792 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.89 74.0 7.79e-01 86.1% 96.2%
4792422 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.89 80.0 5.90e-01 100.0% 41.6%
3988987 702.1.1.3 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.89 69.0 7.44e-01 85.2% 93.0%
4373799 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.87 82.0 5.40e-01 98.3% 35.1%
4591362 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.87 83.0 6.78e-01 100.0% 60.0%
4596105 702.1.1.1 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1 0.87 73.0 7.26e-01 87.8% 88.3%
2266 702.1.1.9 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1, Choline_bind_2, Choline_bind_3 0.87 82.0 6.27e-01 98.3% 57.3%
4662378 1032.1.1.0 ↗ alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain 0.87 73.0 4.21e-01 87.8% 11.8%
3987255 702.1.1.3 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.87 78.0 5.93e-01 100.0% 44.5%
2531530 702.1.1.0 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.87 73.0 6.41e-01 88.7% 67.5%
2905753 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.86 72.0 6.09e-01 86.1% 61.5%
3987218 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.86 83.0 7.14e-01 99.1% 81.2%
4578847 702.1.1.3 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.86 78.0 5.30e-01 98.3% 30.9%
3988985 702.1.1.3 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.86 68.0 7.33e-01 83.5% 94.0%
4396385 702.1.1.0 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.86 81.0 5.26e-01 100.0% 26.6%
4271349 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.85 79.0 5.84e-01 97.4% 61.9%
4878267 702.1.1.7 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_3 0.85 51.0 6.49e-01 84.3% 100.0%
4527800 1033.1.1.3 ↗ beta duplicates or obligate multimers › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › TcdA_TcdB_pore, PF30720 0.85 70.0 4.07e-01 92.2% 11.1%
4505171 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.85 76.0 5.19e-01 93.9% 31.3%
1826876 702.1.1.3 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.85 75.0 5.82e-01 100.0% 46.7%
2883161 702.1.1.3 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.85 76.0 6.66e-01 98.3% 67.9%
1773021 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.84 79.0 5.63e-01 98.3% 49.0%
4446725 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.84 80.0 6.80e-01 100.0% 94.9%
4514947 1032.1.1.0 ↗ alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain 0.84 79.0 4.42e-01 98.3% 10.7%
4819490 702.1.1.3 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.84 79.0 6.95e-01 100.0% 71.9%
2905750 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.83 77.0 5.17e-01 97.4% 44.4%
4135591 702.1.1.1 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1 0.83 79.0 5.12e-01 100.0% 45.3%
2138976 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.81 53.0 6.44e-01 97.4% 100.0%
4457120 702.1.1.7 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_3 0.79 66.0 6.63e-01 87.8% 87.8%
1292986 702.1.1.1 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1 0.78 68.0 6.07e-01 91.3% 72.9%
2453130 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.77 71.0 5.44e-01 98.3% 65.2%
4878265 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.76 62.0 6.20e-01 86.1% 95.8%
1292985 702.1.1.1 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1 0.76 61.0 6.12e-01 84.3% 87.2%
2125354 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.75 61.0 5.93e-01 85.2% 84.7%
1408358 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.74 68.0 5.47e-01 98.3% 59.3%
2265 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.74 68.0 6.20e-01 98.3% 87.2%
1140094 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.73 60.0 5.95e-01 86.1% 86.4%
1822971 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.72 65.0 4.72e-01 100.0% 55.5%
2832526 702.1.1.1 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1 0.65 53.0 5.19e-01 86.1% 83.9%