←Back to structures

KT353109.1__AKY03933.1__ADU18_0029__00027

Bact-Vir

KT353109.1__AKY03933.1__ADU18_0029__00027

Identity

Accession:
KT353109 ↗
Kingdom:
phage

Quality

66.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Certrevirus› Cronobacter_phage_PBES_02

TaxID: 1684115

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 86-158
PDB
Domain cluster: rep: MF979560.1__ATS93576.1__P1A145kb_p176__00176__D25-93
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hwiB01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.74 37.0 3.75e-01 74.0% 47.9%
7sbiA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.73 37.0 3.78e-01 75.3% 50.0%
1ef1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.72 36.0 3.57e-01 75.3% 44.3%
2kanA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.72 36.0 3.69e-01 75.3% 47.9%
4p1mB01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.64 38.0 4.62e-01 97.3% 95.6%
3w3aG00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 46.0 3.36e-01 83.6% 42.9%
5yvxA00 3.30.40.100 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.59 37.0 4.05e-01 82.2% 78.3%
1e3hA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.58 48.0 3.34e-01 90.4% 47.2%
1zq3P00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 42.0 4.37e-01 80.8% 95.6%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.55 42.0 3.39e-01 84.9% 63.6%
1tedA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 36.0 2.91e-01 82.2% 33.6%
2jl8102 3.30.160.850 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 29.0 3.55e-01 72.6% 86.7%
4mloA01 2.60.120.810 Mainly Beta › Sandwich › Jelly Rolls › 0.52 38.0 2.96e-01 78.1% 67.3%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3388225 857.1.1.0 ↗ a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like 0.71 41.0 4.40e-01 86.3% 66.2%
3587660 857.1.1.1 ↗ a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA 0.69 46.0 3.63e-01 97.3% 35.7%
3651948 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.65 35.0 3.25e-01 78.1% 38.9%
3989818 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.61 50.0 3.79e-01 89.0% 70.6%
3392449 2485.1.1.67 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GILT 0.59 44.0 3.37e-01 80.8% 50.0%
4940930 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 29.0 3.07e-01 71.2% 47.7%
4961585 221.1.1.48 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2_4 0.57 32.0 2.84e-01 89.0% 36.4%
3188595 708.1.2.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.57 42.0 3.13e-01 78.1% 74.4%
3624443 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 50.0 3.18e-01 100.0% 61.6%
4379527 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.52 37.0 3.55e-01 75.3% 95.3%
4554621 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.51 34.0 3.23e-01 86.3% 56.2%
D2 high residues 181-325
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.55 40.0 3.67e-01 73.8% 94.8%
4mhxA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.54 44.0 3.12e-01 87.6% 86.1%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.54 23.0 3.26e-01 84.1% 82.6%
4ak1A01 2.60.40.2710 Mainly Beta › Sandwich › Immunoglobulin-like › BT4661 domain 1 0.52 26.0 3.14e-01 96.6% 70.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3579987 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.57 33.0 3.72e-01 84.1% 73.6%
4464751 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.56 40.0 3.83e-01 73.8% 95.9%
3895500 6129.1.1.11 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › ITI_HC_C 0.54 46.0 3.89e-01 91.7% 97.5%
4024671 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.53 38.0 3.56e-01 73.1% 97.2%
3594305 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 42.0 3.43e-01 86.9% 81.1%
4027339 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.51 36.0 3.68e-01 73.1% 91.4%
D3 medium residues 13-70
PDB