Back to structures

KT361651.1__ALA12465.1__HARRISON_65__00065

Bact-Vir

KT361651.1__ALA12465.1__HARRISON_65__00065

Identity

Accession:
KT361651 ↗
Kingdom:
phage

Quality

71.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-93
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2id3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 40.0 4.90e-01 70.2% 100.0%
4jykA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 44.0 4.98e-01 88.1% 100.0%
3dewA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 40.0 4.74e-01 70.2% 100.0%
1pu6A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.65 52.0 4.56e-01 85.7% 91.9%
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 36.0 4.48e-01 70.2% 100.0%
6rxaA01 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.64 51.0 5.10e-01 94.0% 82.8%
4fe7A03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 45.0 4.15e-01 96.4% 56.9%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 47.0 5.14e-01 83.3% 100.0%
2lyiA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.62 51.0 4.30e-01 92.9% 58.1%
4dvyP01 1.10.357.130 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.61 48.0 3.72e-01 96.4% 37.1%
4ol9A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.61 46.0 4.06e-01 82.1% 58.3%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 52.0 4.94e-01 100.0% 88.1%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 43.0 4.56e-01 92.9% 90.5%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 51.0 3.92e-01 98.8% 44.4%
4jb3A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 42.0 4.49e-01 78.6% 95.8%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 41.0 3.86e-01 75.0% 68.9%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.56 46.0 4.52e-01 98.8% 86.7%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 46.0 4.75e-01 95.2% 96.3%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 42.0 3.70e-01 84.5% 62.9%
3qldA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 48.0 4.00e-01 100.0% 94.1%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 44.0 3.80e-01 91.7% 57.3%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 39.0 3.74e-01 73.8% 75.0%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 43.0 4.03e-01 86.9% 68.9%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 39.0 3.61e-01 97.6% 60.2%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 41.0 4.00e-01 92.9% 78.4%
1jqkA03 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.51 39.0 3.12e-01 82.1% 74.3%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 40.0 4.18e-01 95.2% 97.4%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5040788 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 42.0 4.60e-01 73.8% 76.9%
3198806 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 44.0 5.07e-01 78.6% 100.0%
3960471 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.67 53.0 5.63e-01 94.0% 100.0%
3724068 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 41.0 4.76e-01 82.1% 98.2%
3966271 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 45.0 4.81e-01 79.8% 92.9%
3588264 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 45.0 4.41e-01 78.6% 91.1%
5051285 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.58 43.0 3.49e-01 100.0% 40.0%
4485423 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.58 41.0 3.71e-01 97.6% 52.5%
None 0.58 43.0 2.75e-01 82.1% 32.6%
3279133 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 49.0 4.75e-01 100.0% 87.4%
4026787 108.1.1.29 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.57 45.0 3.97e-01 90.5% 88.9%
4026345 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 45.0 4.17e-01 90.5% 78.3%
3222426 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.56 43.0 3.69e-01 100.0% 49.0%
4965203 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.56 47.0 4.37e-01 100.0% 73.1%
3273891 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.56 40.0 3.60e-01 75.0% 80.8%
3649101 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 4.30e-01 97.6% 75.0%
3596872 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 48.0 3.99e-01 100.0% 65.0%
4242802 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.56 41.0 3.50e-01 100.0% 45.3%
4237263 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.56 49.0 4.37e-01 98.8% 79.2%
4975020 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.55 48.0 4.16e-01 97.6% 66.7%
3440941 101.1.10.21 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C 0.55 43.0 3.09e-01 84.5% 84.6%
3265616 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 46.0 4.56e-01 94.0% 86.7%
3354328 101.1.10.4 alpha arrays › HTH › HTH › Cyclin-like › RB_B 0.55 44.0 3.59e-01 91.7% 47.4%
4550536 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.55 39.0 3.84e-01 97.6% 70.0%
None 0.55 41.0 2.61e-01 82.1% 31.8%
3411624 108.1.1.30 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 0.54 46.0 3.66e-01 97.6% 69.2%
3796366 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.54 34.0 3.51e-01 70.2% 66.3%
5079431 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 44.0 3.88e-01 92.9% 86.9%
5076381 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.53 43.0 4.13e-01 90.5% 76.0%
4990528 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.53 41.0 4.14e-01 92.9% 85.9%
3755505 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.53 40.0 3.67e-01 92.9% 60.0%
3600574 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.53 42.0 3.46e-01 100.0% 45.5%
4147448 148.1.3.4 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C 0.52 41.0 4.08e-01 88.1% 100.0%
4955899 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.52 38.0 3.56e-01 88.1% 61.8%
5025138 101.1.10.80 alpha arrays › HTH › HTH › Cyclin-like › Zn_Ribbon_TF 0.51 41.0 3.20e-01 90.5% 61.0%
4984123 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.51 43.0 3.50e-01 98.8% 60.0%
4978149 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.51 41.0 4.03e-01 92.9% 84.2%
3957626 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.51 43.0 3.66e-01 98.8% 73.3%
3874422 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.50 40.0 3.59e-01 89.3% 61.6%
D2 high residues 175-260
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07261.17 best DnaB_2 22.1 1.50e-04 83.7% 90.5%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i5uA00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.79 59.0 6.21e-01 79.1% 100.0%
2qbyA01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 54.0 5.08e-01 87.2% 74.8%
1z6tA03 1.10.8.430 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Helical domain of apoptotic protease-activating factors 0.62 50.0 5.12e-01 88.4% 98.8%
2lwxA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.62 47.0 4.67e-01 80.2% 86.4%
7kypB01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.62 52.0 3.70e-01 94.2% 86.3%
2fnaA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 44.0 4.65e-01 83.7% 90.8%
3jyhA02 1.20.120.980 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Serine carboxypeptidase S28, SKS domain 0.59 44.0 3.68e-01 79.1% 83.9%
2kzcA00 1.10.790.20 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Domain of unknown function DUF1476 0.58 38.0 3.91e-01 96.5% 68.2%
4p17A02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.57 46.0 4.26e-01 88.4% 73.6%
3pvlA03 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.57 42.0 3.81e-01 95.3% 56.8%
6wh0A01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.54 38.0 3.28e-01 74.4% 80.3%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.54 42.0 3.68e-01 84.9% 61.5%
4efcA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.52 36.0 3.31e-01 72.1% 71.1%
6dcjA02 1.25.40.650 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 36.0 3.43e-01 73.3% 100.0%
1exaA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.51 39.0 2.89e-01 81.4% 65.3%
2r6iA02 1.10.3580.10 Mainly Alpha › Orthogonal Bundle › ATP12-like fold › ATP12 ATPase 0.50 40.0 3.32e-01 90.7% 89.0%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031651 4230.1.1.3 alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.86 73.0 7.03e-01 89.5% 82.1%
4048400 4230.1.1.3 alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.79 69.0 6.95e-01 96.5% 96.5%
4042821 4230.1.1.0 alpha arrays › DnaD domain › DnaD domain › DnaD domain 0.78 65.0 6.10e-01 90.7% 78.1%
3357654 148.1.3.205 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_At3g28540 0.77 59.0 5.71e-01 81.4% 72.6%
3988210 4230.1.1.3 alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.75 66.0 6.39e-01 94.2% 92.6%
4498620 4230.1.1.3 alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.74 57.0 6.18e-01 83.7% 100.0%
3241961 3361.1.1.1 alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › RAC_head 0.70 52.0 5.26e-01 77.9% 82.4%
3547029 148.1.3.221 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › NPHP3_hel 0.69 58.0 5.90e-01 98.8% 94.1%
3914006 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 55.0 5.66e-01 94.2% 95.0%
4033485 571.1.1.1 alpha arrays › Replisome organizer (g39p helicase loader/inhibitor protein) › Replisome organizer (g39p helicase loader/inhibitor protein) › Replisome organizer (g39p helicase loader/inhibitor protein) › G39P_N 0.68 49.0 5.43e-01 81.4% 100.0%
3722530 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.67 54.0 5.54e-01 94.2% 96.2%
3536006 7060.1.1.1 alpha arrays › ELMO domain › ELMO domain › ELMO domain › ELMO_CED12 0.65 56.0 4.16e-01 98.8% 54.9%
4019633 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 49.0 5.01e-01 91.9% 84.7%
4940746 3457.1.1.1 alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 0.64 53.0 4.21e-01 93.0% 64.4%
3327946 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 52.0 5.37e-01 89.5% 95.0%
4376168 3361.1.1.1 alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › RAC_head 0.63 46.0 4.24e-01 76.7% 65.5%
4224437 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.63 47.0 5.09e-01 97.7% 100.0%
4962704 3317.1.1.8 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › DUF7119 0.62 44.0 4.92e-01 89.5% 100.0%
5060357 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 45.0 4.64e-01 81.4% 88.7%
5059610 148.1.3.403 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RNA_pol_Rpb1_5 0.58 49.0 4.13e-01 96.5% 58.1%
3396058 3361.1.1.1 alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › RAC_head 0.58 42.0 4.18e-01 77.9% 80.0%
3459081 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 45.0 4.77e-01 91.9% 100.0%
5057998 5076.2.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.57 46.0 3.36e-01 89.5% 67.3%
3366323 101.1.10.21 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C 0.57 46.0 3.43e-01 90.7% 79.6%
5028154 3831.1.1.0 alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 0.57 44.0 3.90e-01 83.7% 80.0%
5030004 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.56 39.0 3.70e-01 74.4% 70.9%
3242453 5082.1.1.1 alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.53 39.0 3.01e-01 79.1% 84.2%
4452686 160.1.1.1 alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C 0.53 45.0 3.84e-01 98.8% 89.3%
3943200 159.1.4.3 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Type II deoxyuridine triphosphatase-related › PRA-PH 0.51 42.0 2.97e-01 88.4% 95.4%
3964423 2004.1.1.455 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 0.50 43.0 2.64e-01 100.0% 58.9%