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KT381864.1__ALF02063.1__vBThpSP1_024__00024

Bact-Vir

KT381864.1__ALF02063.1__vBThpSP1_024__00024

Identity

Accession:
KT381864 ↗
Kingdom:
phage

Quality

93.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thiobacimonas_phage_vB_ThpS-P1

TaxID: 1698523

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-84
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 45.0 3.98e-01 100.0% 43.5%
2dbuB00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.67 38.0 2.80e-01 77.5% 20.5%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 36.0 4.01e-01 100.0% 69.1%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 35.0 3.87e-01 100.0% 70.7%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.61 41.0 4.21e-01 100.0% 73.5%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 40.0 2.59e-01 98.6% 15.1%
2i87B02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.60 46.0 3.53e-01 83.1% 95.0%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 36.0 3.40e-01 98.6% 50.6%
1ehiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 41.0 3.18e-01 76.1% 47.2%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.56 46.0 3.49e-01 88.7% 56.4%
5hdiA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.55 48.0 3.00e-01 100.0% 30.5%
3h8lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 45.0 3.27e-01 91.5% 90.2%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 33.0 3.68e-01 94.4% 85.7%
1nbwA04 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 44.0 3.72e-01 97.2% 95.5%
4iq0C02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 46.0 3.36e-01 93.0% 75.7%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.80e-01 91.5% 23.1%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.52 31.0 2.78e-01 73.2% 40.6%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 30.0 3.50e-01 87.3% 97.4%
2w20B01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 44.0 2.82e-01 100.0% 35.7%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.52 29.0 3.23e-01 94.4% 70.6%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.51 28.0 3.15e-01 95.8% 72.0%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.66e-01 90.1% 22.4%
3cetB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 33.0 3.03e-01 88.7% 45.5%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3962065 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.69 40.0 2.72e-01 100.0% 16.4%
4203006 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.66 32.0 2.73e-01 73.2% 28.2%
4028313 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 59.0 4.00e-01 100.0% 38.8%
4019077 928.1.1.0 ↗ few secondary structure elements › Bubble protein › Bubble protein › Bubble protein 0.64 41.0 4.72e-01 91.5% 94.0%
4027091 375.3.1.2 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.60 29.0 3.22e-01 78.9% 56.4%
5027344 1170.1.1.0 ↗ beta barrels › IL8-related › IL8-related › IL8 0.59 38.0 4.22e-01 100.0% 85.5%
None — 0.58 42.0 2.89e-01 76.1% 30.3%
3188326 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 38.0 2.49e-01 100.0% 14.0%
4660425 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.57 46.0 3.82e-01 84.5% 60.9%
3259368 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.57 49.0 3.06e-01 100.0% 31.5%
1870736 7577.1.1.2 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 0.57 41.0 2.58e-01 77.5% 86.4%
4679970 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.56 45.0 3.91e-01 100.0% 57.1%
4947584 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.55 39.0 2.71e-01 74.6% 30.0%
5072965 2002.1.1.57 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D 0.55 41.0 2.59e-01 77.5% 50.7%
3397609 391.1.2.3 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.55 38.0 3.49e-01 81.7% 53.7%
3601907 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.55 41.0 3.07e-01 97.2% 31.0%
4444908 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 44.0 3.08e-01 91.5% 72.2%
5022543 2002.1.1.36 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.54 43.0 2.61e-01 90.1% 50.5%
4616207 4.1.1.448 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5372 0.54 27.0 3.15e-01 83.1% 64.0%
4960783 219.1.1.63 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › TGL 0.53 44.0 3.03e-01 90.1% 42.3%
3708366 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.52 42.0 3.19e-01 85.9% 38.1%
3252442 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 45.0 3.75e-01 100.0% 54.6%
4940641 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 31.0 3.61e-01 83.1% 91.1%
3536979 5.1.3.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.51 43.0 2.96e-01 100.0% 68.1%
3924808 719.2.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.51 36.0 3.55e-01 94.4% 68.8%
2817936 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 34.0 2.44e-01 94.4% 20.6%
4023722 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.50 43.0 2.64e-01 94.4% 80.6%
4533523 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.50 32.0 3.34e-01 95.8% 69.2%
3589758 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.50 40.0 3.01e-01 85.9% 96.6%