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KT588075.2__ALJ99159.1__Ab1052phi_62__00062

Bact-Vir

KT588075.2__ALJ99159.1__Ab1052phi_62__00062

Identity

Accession:
KT588075 ↗
Kingdom:
phage

Quality

68.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vieuvirus› Acinetobacter_phage_Ab105-2phi

TaxID: 1718841

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-48
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3veaA02 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.82 57.0 5.52e-01 73.9% 65.4%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 58.0 5.45e-01 80.4% 98.2%
4fjqA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.74 51.0 3.05e-01 78.3% 9.5%
3vpxB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.70 48.0 3.11e-01 71.7% 38.2%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.68 52.0 4.66e-01 84.8% 59.7%
1sr9A02 3.30.160.270 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain 0.65 50.0 3.53e-01 89.1% 27.4%
7vkkB01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 49.0 3.10e-01 84.8% 40.7%
7sf2A03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.61 45.0 2.75e-01 78.3% 15.7%
6nyyE01 1.20.58.760 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41 0.60 46.0 3.14e-01 84.8% 36.4%
3d1bB00 1.20.920.40 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.60 44.0 3.49e-01 80.4% 79.6%
7tvyA01 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.60 42.0 3.16e-01 73.9% 64.7%
3w3sA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.60 45.0 2.71e-01 84.8% 26.5%
2mgwA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 40.0 3.88e-01 71.7% 61.5%
3e9mB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 42.0 2.76e-01 78.3% 75.8%
1e3oC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 45.0 4.50e-01 84.8% 100.0%
4z7eA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 45.0 3.25e-01 93.5% 100.0%
3c3dA02 1.10.8.240 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain 0.55 38.0 3.28e-01 78.3% 87.5%
3dddA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 47.0 3.46e-01 100.0% 91.5%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.55 41.0 3.59e-01 82.6% 71.2%
2gmsB01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.52 36.0 2.41e-01 80.4% 14.3%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937892 101.1.3.32 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › RHH_1 0.95 83.0 6.24e-01 95.7% 43.0%
4994233 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.95 77.0 6.25e-01 87.0% 50.0%
5029686 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.93 74.0 6.12e-01 84.8% 52.0%
4970117 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.92 73.0 5.70e-01 87.0% 43.3%
4993165 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.92 74.0 5.72e-01 87.0% 42.1%
4962381 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.91 73.0 7.13e-01 87.0% 80.0%
4375217 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.91 69.0 5.57e-01 84.8% 46.3%
3985544 101.1.11.65 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RepB-RCR_reg 0.91 77.0 7.26e-01 93.5% 80.0%
2081534 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.90 73.0 6.23e-01 87.0% 57.1%
3270649 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.90 60.0 5.44e-01 71.7% 53.3%
4058428 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.90 69.0 6.52e-01 82.6% 69.1%
5012232 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.89 79.0 7.41e-01 97.8% 83.6%
4946063 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.87 75.0 7.07e-01 95.7% 81.8%
None — 0.87 60.0 5.28e-01 71.7% 50.8%
2625223 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.85 75.0 7.05e-01 97.8% 81.8%
3504504 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.85 62.0 6.85e-01 76.1% 100.0%
4946062 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.84 71.0 6.95e-01 95.7% 90.0%
3586991 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.83 65.0 5.51e-01 84.8% 53.3%
5011906 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.83 68.0 6.46e-01 95.7% 76.4%
4984124 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.82 63.0 5.65e-01 84.8% 60.0%
5045263 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.82 64.0 5.36e-01 87.0% 52.5%
4980865 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.81 68.0 5.70e-01 95.7% 60.0%
5033202 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.81 69.0 5.56e-01 97.8% 52.2%
3588552 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.81 64.0 5.55e-01 87.0% 61.4%
2409509 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.80 65.0 5.96e-01 91.3% 75.4%
2865 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.80 70.0 5.74e-01 100.0% 60.5%
3807164 101.1.11.3 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › TCP 0.77 61.0 5.81e-01 89.1% 81.8%
3359932 101.1.11.3 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › TCP 0.76 60.0 5.48e-01 91.3% 75.4%
5028248 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.75 55.0 5.41e-01 80.4% 74.0%
3646563 101.1.11.3 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › TCP 0.75 62.0 4.74e-01 95.7% 45.5%
3174869 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.69 47.0 4.25e-01 73.9% 50.8%
4961908 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.69 49.0 4.18e-01 78.3% 51.2%
1019405 101.1.18.1 ↗ alpha arrays › HTH › HTH › HTH domain in DNA polymerase accessory protein 62 › Phage_clamp_A 0.67 47.0 4.08e-01 78.3% 46.7%
3800383 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 51.0 4.64e-01 95.7% 92.3%
4337360 3697.1.1.1 ↗ alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx 0.61 45.0 3.86e-01 82.6% 87.5%
3275070 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.60 42.0 3.58e-01 78.3% 41.2%
5031174 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.59 44.0 3.83e-01 78.3% 55.7%
4967880 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.57 46.0 3.48e-01 95.7% 91.2%
4510292 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.54 43.0 3.71e-01 91.3% 54.7%
D2 high residues 62-124
PDB