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KT624200.1__AMM44812.1__SP15_013__00014

Bact-Vir

KT624200.1__AMM44812.1__SP15_013__00014

Identity

Accession:
KT624200 ↗
Kingdom:
phage

Quality

75.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-106_168-246
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kreA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 39.0 3.34e-01 75.0% 98.1%
1fx3B00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.51 35.0 3.57e-01 96.8% 71.8%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.50 29.0 3.43e-01 98.1% 81.3%
1bcoA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 36.0 3.22e-01 73.1% 100.0%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3282536 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.66 30.0 4.15e-01 73.1% 85.0%
4948537 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.57 39.0 3.02e-01 70.5% 31.7%
4957500 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.54 30.0 3.71e-01 76.3% 87.4%
4494081 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 38.0 3.52e-01 72.4% 94.5%
3805242 192.18.1.0 alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like 0.53 39.0 2.71e-01 75.6% 91.5%
3305127 2484.1.1.157 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.52 28.0 3.19e-01 70.5% 65.8%
4105352 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.52 38.0 3.16e-01 76.3% 94.2%
3421242 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 41.0 2.84e-01 84.0% 97.2%
4660860 2484.1.1.222 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UPF0236 0.51 39.0 3.25e-01 79.5% 93.8%
4351609 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.51 37.0 3.54e-01 76.3% 96.3%
3664107 192.18.1.0 alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like 0.51 39.0 2.44e-01 79.5% 56.6%
3961415 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.51 37.0 2.99e-01 75.6% 84.9%
3959683 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 38.0 3.07e-01 78.8% 73.9%
D2 high residues 109-165
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.87 62.0 6.74e-01 75.4% 100.0%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.86 61.0 4.71e-01 73.7% 41.6%
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.85 59.0 6.37e-01 71.9% 89.6%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.85 61.0 5.59e-01 75.4% 64.4%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.85 58.0 4.26e-01 71.9% 30.5%
2a26B01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.83 58.0 6.46e-01 75.4% 95.5%
2ebfX02 1.20.140.180 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.82 69.0 5.00e-01 89.5% 42.0%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.82 59.0 4.99e-01 75.4% 97.8%
1y4cA03 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.80 71.0 5.62e-01 98.2% 100.0%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 57.0 5.04e-01 73.7% 67.9%
3caxA01 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.80 71.0 4.68e-01 98.2% 52.5%
1fioA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 66.0 4.53e-01 91.2% 48.9%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.78 61.0 4.81e-01 84.2% 67.5%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.77 67.0 5.90e-01 100.0% 90.6%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.77 58.0 4.89e-01 78.9% 71.4%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.77 70.0 5.21e-01 100.0% 76.3%
4ksaA02 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.76 63.0 4.60e-01 87.7% 90.5%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.74 61.0 4.08e-01 91.2% 24.3%
4ga0A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.74 52.0 3.84e-01 84.2% 29.4%
2pl2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.74 61.0 4.24e-01 93.0% 44.3%
2hepA00 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 50.0 5.65e-01 78.9% 97.6%
2af0A02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.73 63.0 5.67e-01 98.2% 95.0%
3l0iA01 1.20.120.1520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.72 63.0 4.40e-01 100.0% 31.2%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.72 58.0 5.81e-01 87.7% 89.5%
1txuA02 1.20.1050.80 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › VPS9 domain 0.70 61.0 4.47e-01 100.0% 41.9%
4g10A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.70 60.0 4.53e-01 94.7% 72.1%
3pjaJ01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.69 58.0 4.43e-01 93.0% 59.5%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.69 55.0 4.36e-01 91.2% 89.8%
6axfA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.69 56.0 4.42e-01 89.5% 53.8%
3fajA00 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.69 57.0 4.79e-01 94.7% 95.0%
3c7jA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.68 61.0 4.51e-01 100.0% 58.9%
1d2dA00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.68 53.0 5.40e-01 86.0% 91.1%
6ldkA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.68 57.0 4.06e-01 94.7% 68.0%
6dcjA02 1.25.40.650 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 55.0 4.52e-01 91.2% 53.8%
1j1jA01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.63 53.0 4.16e-01 98.2% 56.8%
6ofsA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.63 45.0 3.04e-01 75.4% 60.7%
1hr6B02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.61 46.0 3.15e-01 82.5% 68.3%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 49.0 4.01e-01 93.0% 68.8%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 47.0 4.27e-01 91.2% 69.5%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 4.23e-01 93.0% 87.5%
2m3aA00 1.10.10.1900 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Knl-2 Myb-like DNA-binding domain-like 0.50 40.0 3.84e-01 100.0% 77.6%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3258150 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.92 62.0 7.32e-01 70.2% 100.0%
3595966 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.84 59.0 5.57e-01 73.7% 67.6%
4040184 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.84 58.0 6.13e-01 71.9% 88.0%
4954852 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.84 60.0 4.16e-01 75.4% 26.0%
3266812 3291.1.1.211 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › EMC3_TMCO1 0.83 60.0 4.22e-01 75.4% 29.4%
3909630 601.48.1.0 alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain 0.81 64.0 5.79e-01 89.5% 64.0%
3879987 601.48.1.0 alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain 0.81 65.0 6.23e-01 91.2% 75.4%
3956906 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.80 58.0 5.24e-01 75.4% 64.0%
3257047 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.80 68.0 4.26e-01 93.0% 37.8%
3610860 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.79 66.0 4.89e-01 91.2% 60.0%
3699649 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.79 66.0 4.66e-01 91.2% 50.9%
4883119 601.32.1.1 alpha bundles › Four-helical up-and-down bundle › FusB family N-terminal domain › FusB family N-terminal domain › EF-G-binding_N 0.78 68.0 5.59e-01 100.0% 73.3%
3604350 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.78 69.0 5.40e-01 100.0% 74.2%
3922862 601.28.1.0 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.78 67.0 5.22e-01 98.2% 82.4%
3510367 603.1.1.99 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 0.77 66.0 4.74e-01 93.0% 52.9%
3415464 196.1.1.1 alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS 0.77 67.0 5.01e-01 98.2% 55.0%
3832769 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.77 65.0 4.63e-01 91.2% 54.8%
3707377 604.12.1.73 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF27107 0.76 65.0 4.92e-01 91.2% 65.6%
3608893 109.4.1.1201 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RESC6 0.75 65.0 3.93e-01 94.7% 27.1%
3903825 611.3.1.0 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.75 61.0 5.28e-01 87.7% 84.7%
5054531 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 62.0 5.11e-01 93.0% 52.0%
3286740 109.4.1.45 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BTAD 0.74 60.0 4.32e-01 87.7% 41.3%
3539252 627.1.1.1 alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 0.74 64.0 4.54e-01 98.2% 37.1%
3509255 5057.1.1.0 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.74 60.0 5.01e-01 91.2% 74.0%
3708428 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 63.0 4.40e-01 96.5% 51.1%
3940971 109.4.1.1367 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26723 0.73 61.0 3.43e-01 91.2% 15.8%
3716333 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.72 62.0 4.11e-01 94.7% 81.4%
3962847 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.71 58.0 4.93e-01 87.7% 83.3%
3441767 4133.1.1.2 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110 0.70 60.0 3.84e-01 94.7% 24.3%
3530124 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 54.0 4.97e-01 91.2% 65.0%
3958627 628.1.1.1 alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD 0.68 61.0 4.33e-01 100.0% 50.9%
4028749 627.1.1.1 alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 0.68 59.0 4.38e-01 100.0% 46.5%
3719809 592.1.1.0 alpha arrays › PWI domain-like › PWI domain › PWI domain 0.66 54.0 4.57e-01 94.7% 58.0%
4099504 604.17.1.0 alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.64 50.0 4.98e-01 91.2% 86.7%
3507677 101.35.1.25 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF26215 0.64 52.0 4.48e-01 91.2% 73.1%
4034377 4982.1.1.2 alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › RsbU_N 0.60 48.0 4.29e-01 100.0% 61.1%
3798173 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 43.0 4.09e-01 98.2% 97.1%