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KT624200.1__AMM44821.1__SP15_022__00023

Bact-Vir

KT624200.1__AMM44821.1__SP15_022__00023

Identity

Accession:
KT624200 ↗
Kingdom:
phage

Quality

74.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thornevirus› Bacillus_phage_SP-15

TaxID: 1792032

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 111-218_454-485
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00388__D99-198_300-332
D2 high residues 390-449
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.79 56.0 5.54e-01 73.3% 96.8%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.67 48.0 3.20e-01 93.3% 19.7%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 5.04e-01 90.0% 86.0%
2f48A03 1.10.10.480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphofructokinase; domain 3 0.65 56.0 5.26e-01 100.0% 89.3%
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.64 50.0 4.23e-01 100.0% 50.5%
3c65A00 3.30.420.340 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain 0.64 47.0 3.57e-01 98.3% 31.8%
3d5lA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 5.19e-01 90.0% 100.0%
4behA01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 51.0 5.10e-01 100.0% 87.5%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 4.51e-01 96.7% 64.3%
3d5lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 4.69e-01 91.7% 100.0%
1s7zA01 1.20.120.780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DNA mimic ocr 0.60 52.0 4.44e-01 100.0% 97.0%
2c83A01 3.40.50.11120 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sialyltransferase, N-terminal GT-B Rossman nucleotide-binding domain 0.60 38.0 2.59e-01 98.3% 18.3%
2eucA00 1.10.8.570 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Hypothetical protein YfmB 0.60 52.0 4.27e-01 95.0% 82.2%
2bzlA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 48.0 3.21e-01 100.0% 22.2%
4qhpA05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.56 50.0 3.13e-01 100.0% 19.9%
5cofA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.56 40.0 2.88e-01 78.3% 26.2%
1tzvA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.56 46.0 3.67e-01 100.0% 58.2%
4nlbA02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.55 40.0 3.53e-01 100.0% 51.1%
3bg2A03 1.10.3410.10 Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain 0.54 41.0 3.53e-01 81.7% 52.1%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.54 45.0 4.11e-01 96.7% 70.9%
6o1wA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 43.0 2.88e-01 91.7% 30.6%
4d3zA02 1.10.132.130 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.54 45.0 3.72e-01 95.0% 64.5%
2fozA00 1.10.4080.10 Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 0.53 44.0 2.85e-01 100.0% 61.9%
3frwB00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.53 40.0 3.56e-01 100.0% 54.2%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.52 43.0 3.88e-01 98.3% 67.1%
2gf4A00 1.20.1270.110 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 0.52 37.0 3.24e-01 78.3% 51.1%
2hgkA01 1.20.1440.40 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › YqcC-like 0.51 41.0 3.52e-01 93.3% 55.2%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 43.0 4.32e-01 98.3% 92.1%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4009124 639.2.1.5 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › PF27475 0.81 55.0 5.58e-01 71.7% 96.7%
5028153 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 64.0 5.74e-01 93.3% 62.7%
3404571 101.1.2.206 ↗ alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.75 68.0 6.14e-01 100.0% 88.7%
3554511 101.1.2.206 ↗ alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.75 66.0 5.98e-01 98.3% 88.7%
5048461 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 66.0 5.84e-01 100.0% 91.8%
3587166 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 64.0 6.12e-01 100.0% 85.7%
3490008 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 58.0 5.70e-01 88.3% 84.6%
None — 0.71 63.0 5.77e-01 100.0% 90.0%
3472278 101.1.2.206 ↗ alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.71 61.0 5.70e-01 96.7% 96.0%
5067843 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.71 53.0 5.69e-01 86.7% 98.0%
5040366 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 57.0 5.78e-01 98.3% 90.0%
3702175 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.70 59.0 5.30e-01 98.3% 67.1%
3274011 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 59.0 5.75e-01 93.3% 92.3%
4508795 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.68 59.0 5.42e-01 98.3% 80.0%
3436562 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 57.0 5.32e-01 95.0% 88.0%
3850394 101.33.1.1 ↗ alpha arrays › HTH › Replication foci-targeting sequence C-terminal domain › Replication foci-targeting sequence C-terminal domain › DNMT1-RFD 0.67 57.0 5.01e-01 100.0% 67.4%
3727213 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 56.0 5.51e-01 100.0% 96.9%
5035810 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.66 57.0 4.73e-01 100.0% 56.4%
3702325 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 52.0 5.45e-01 90.0% 96.4%
4023609 101.1.1.28 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SWIRM 0.64 56.0 4.85e-01 100.0% 63.2%
3738345 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.61 52.0 4.90e-01 98.3% 88.0%
3461971 109.46.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) 0.60 53.0 3.95e-01 100.0% 45.8%
4935180 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.60 52.0 4.45e-01 100.0% 64.0%
4990322 3193.1.1.0 ↗ alpha arrays › HopAB effectors Pto-binding domain-related › HopAB effectors Pto-binding domain-related › HopAB effectors Pto-binding domain-related 0.60 51.0 5.02e-01 95.0% 100.0%
3394199 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.60 44.0 3.33e-01 78.3% 49.3%
3509156 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.60 50.0 4.78e-01 95.0% 98.6%
3238440 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.59 49.0 4.83e-01 93.3% 96.9%
3518933 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.59 51.0 5.02e-01 98.3% 96.9%
3170408 601.1.1.108 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › TYA 0.58 41.0 3.72e-01 76.7% 70.0%
3574922 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 50.0 4.92e-01 98.3% 92.3%
3175855 4967.1.1.27 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › TYA 0.57 41.0 3.66e-01 78.3% 66.3%
3544646 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.56 46.0 4.47e-01 98.3% 100.0%
3993206 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.56 44.0 4.24e-01 91.7% 100.0%
3435195 2484.1.1.21 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.56 49.0 3.42e-01 100.0% 29.8%
62158 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.56 46.0 3.67e-01 100.0% 59.3%
3264568 3748.1.1.3 ↗ extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › eIF3h_C 0.55 42.0 3.49e-01 81.7% 73.3%
3943035 639.2.1.0 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.55 45.0 4.42e-01 93.3% 90.8%
3617550 4342.1.1.0 ↗ alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like 0.54 45.0 3.22e-01 100.0% 81.4%
3241767 109.4.1.343 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RAB3GAP2_C 0.53 45.0 2.74e-01 100.0% 13.6%
3168929 4323.1.1.1 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.53 40.0 2.93e-01 81.7% 28.6%
3424523 604.5.1.7 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ALMT 0.53 42.0 3.77e-01 95.0% 80.0%
D3 medium residues 1-59
PDB
D4 medium residues 60-105_492-539
PDB
Domain cluster: rep: OQ999172.1__WJZ23479.1__LIS04_51__00051__D56-141