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KT624200.1__AMM44890.1__SP15_091__00092

Bact-Vir

KT624200.1__AMM44890.1__SP15_091__00092

Identity

Accession:
KT624200 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thornevirus› Bacillus_phage_SP-15

TaxID: 1792032

Cluster

View cluster (21 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-95
PDB
Domain cluster: rep: OR475272.1__WNM67085.1__SEA_SCHOMBER_64__00064__D3-92
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.57 31.0 3.61e-01 70.5% 73.5%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.57 29.0 3.33e-01 81.1% 65.3%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.54 38.0 3.56e-01 74.7% 60.0%
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.54 43.0 4.23e-01 89.5% 81.4%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 38.0 3.74e-01 74.7% 73.1%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 40.0 3.62e-01 80.0% 82.0%
1s28A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 39.0 3.51e-01 77.9% 81.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4023805 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 49.0 5.22e-01 70.5% 78.8%
3772921 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 49.0 4.83e-01 71.6% 70.0%
3613928 375.1.1.137 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIB_Zn-ribbon_Tryp 0.64 32.0 4.20e-01 85.3% 97.8%
4539347 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.60 45.0 4.50e-01 80.0% 87.0%
4680318 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.58 47.0 4.82e-01 85.3% 88.9%
3944184 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 46.0 4.46e-01 86.3% 92.4%
4995759 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 44.0 4.72e-01 84.2% 97.5%
8015 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.54 43.0 4.23e-01 89.5% 81.4%
4166935 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.53 42.0 4.19e-01 95.8% 84.0%
D2 high residues 113-193
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2au3A02 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.80 74.0 6.24e-01 100.0% 92.9%
4edgA01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.78 73.0 6.03e-01 100.0% 91.8%
1eqnB01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.78 72.0 6.11e-01 100.0% 96.0%
2fsrA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 50.0 3.98e-01 98.8% 92.4%
1a2pA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.57 42.0 3.87e-01 79.0% 87.0%
3juwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 49.0 3.94e-01 100.0% 97.6%
3cxbA01 3.30.2440.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein SifA fold › Secreted effector protein SifA 0.55 40.0 3.58e-01 80.2% 54.8%
2euiA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 46.0 3.92e-01 97.5% 95.7%
3gw6F01 4.10.1090.10 Few Secondary Structures › Irregular › Endosialidase, domain 4 › Endosialidase, domain 4 0.54 30.0 2.91e-01 87.7% 46.2%
1twfI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 37.0 3.84e-01 80.2% 77.6%
6gmhI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 34.0 3.67e-01 76.5% 76.8%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.53 38.0 3.65e-01 90.1% 65.3%
3bt3A01 3.30.1900.10 Alpha Beta › 2-Layer Sandwich › glyoxalase-related enzyme like fold › glyoxalase-related enzyme like domain 0.52 35.0 3.68e-01 76.5% 77.8%
1sqhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 44.0 3.62e-01 100.0% 67.5%
1nnvA01 3.10.450.140 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative 0.52 41.0 3.87e-01 87.7% 98.0%
3igrA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 44.0 3.47e-01 97.5% 94.0%
2wsaA00 3.40.630.170 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.52 44.0 2.89e-01 100.0% 26.0%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 41.0 3.99e-01 91.4% 92.6%
1y9kA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 38.0 3.43e-01 80.2% 68.1%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4043621 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.80 74.0 5.97e-01 100.0% 92.4%
4206082 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.79 72.0 6.10e-01 100.0% 93.1%
4157635 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.78 72.0 6.17e-01 100.0% 94.4%
4345683 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.78 72.0 6.15e-01 100.0% 94.4%
4467859 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.78 72.0 6.13e-01 100.0% 93.6%
4431937 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.78 71.0 5.87e-01 100.0% 87.9%
4099289 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.77 71.0 6.01e-01 100.0% 89.2%
4096247 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.76 70.0 6.00e-01 100.0% 92.0%
4186968 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.76 70.0 5.91e-01 100.0% 88.5%
3588210 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.74 66.0 6.15e-01 97.5% 98.0%
3978060 4023.1.1.3 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DUF7146 0.66 59.0 5.55e-01 100.0% 92.0%
3896126 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.66 59.0 5.52e-01 100.0% 89.0%
3263635 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 38.0 4.15e-01 72.8% 84.6%
3804890 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.56 35.0 3.97e-01 79.0% 86.4%
3942586 2004.1.1.107 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C 0.55 44.0 3.15e-01 88.9% 88.8%
3606087 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.54 46.0 3.49e-01 100.0% 53.3%
3621358 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.54 36.0 3.97e-01 74.1% 86.2%
3800585 213.1.1.31 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.53 45.0 3.71e-01 100.0% 58.2%
3940245 213.1.1.31 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.53 46.0 4.00e-01 100.0% 77.7%
3199611 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.53 34.0 3.78e-01 70.4% 82.8%
3785270 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 45.0 3.73e-01 98.8% 69.0%
3196091 708.1.2.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.52 36.0 3.37e-01 88.9% 55.2%
3917376 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.52 36.0 3.80e-01 95.1% 81.4%
3713467 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 35.0 3.70e-01 80.2% 78.6%
4469959 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 44.0 3.94e-01 100.0% 72.8%
3573788 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.52 42.0 3.37e-01 90.1% 79.4%
5045707 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 40.0 4.12e-01 84.0% 92.0%
3719029 5.1.8.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.51 43.0 3.44e-01 93.8% 51.5%
3913691 213.1.1.19 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 0.51 44.0 3.63e-01 100.0% 56.1%
3913519 216.1.1.9 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d2 0.51 36.0 3.40e-01 86.4% 59.0%
4934626 243.3.1.52 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 0.50 40.0 3.76e-01 87.7% 95.0%
D3 high residues 201-318
PDB
Domain cluster: rep: IMGVR_UViG_3300042256_000037-3300042256-Ga0451646_00357_7329_9968__D263-392