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KT624200.1__AMM45048.1__SP15_243__00250

Bact-Vir

KT624200.1__AMM45048.1__SP15_243__00250

Identity

Accession:
KT624200 ↗
Kingdom:
phage

Quality

83.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-107
PDB
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gv2A02 3.90.228.10 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.71 65.0 4.96e-01 100.0% 71.4%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.73e-01 74.7% 79.6%
2v2gA02 3.30.1020.10 Alpha Beta › 2-Layer Sandwich › Antioxidant, Horf6; Chain A, domain 2 › Antioxidant, Horf6; Chain A, domain2 0.52 33.0 3.65e-01 76.8% 84.3%
4k05A02 3.90.1150.140 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.50 37.0 3.23e-01 80.0% 66.9%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3256269 237.1.1.0 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.72 66.0 6.39e-01 100.0% 93.3%
3223233 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.54 36.0 2.73e-01 71.6% 27.8%
4627698 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.53 43.0 3.28e-01 89.5% 77.7%
3489471 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.51 41.0 3.37e-01 90.5% 71.8%
5024019 327.16.1.18 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Se_S_carrier 0.51 36.0 3.81e-01 72.6% 87.5%
3392234 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.51 40.0 3.22e-01 88.4% 91.9%
3728863 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.50 41.0 3.51e-01 90.5% 70.6%
D2 high residues 113-176
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lujB01 1.10.10.490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Beta-catenin-interacting ICAT 0.82 57.0 6.20e-01 75.0% 86.8%
3hl1A02 6.10.140.1530 Special › Helix non-globular › Helix Hairpins › 0.65 47.0 4.73e-01 76.6% 93.8%
4f92B10 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.62 49.0 3.85e-01 87.5% 69.9%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 41.0 3.79e-01 84.4% 55.4%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.59 36.0 3.73e-01 78.1% 66.1%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.58 49.0 4.41e-01 93.8% 98.9%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 40.0 3.86e-01 81.2% 62.2%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.58 39.0 4.29e-01 84.4% 91.8%
3ay5A01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.58 42.0 3.34e-01 78.1% 75.2%
2wyhB04 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.58 41.0 3.59e-01 82.8% 48.5%
1vpdA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 50.0 4.01e-01 100.0% 83.2%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.57 42.0 3.70e-01 78.1% 100.0%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 39.0 3.67e-01 79.7% 56.5%
2v4jA01 6.10.140.1420 Special › Helix non-globular › Helix Hairpins › 0.57 41.0 4.16e-01 79.7% 77.8%
3kh1A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.56 43.0 3.12e-01 82.8% 62.1%
2fq4A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 48.0 3.82e-01 100.0% 66.4%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.55 49.0 4.02e-01 100.0% 81.2%
2k19A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.55 37.0 3.33e-01 75.0% 46.9%
3zheC01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 48.0 3.49e-01 100.0% 35.3%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.55 46.0 4.26e-01 100.0% 73.6%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 48.0 3.58e-01 100.0% 40.1%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.54 38.0 3.59e-01 82.8% 60.0%
1ywmA02 1.20.1270.150 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Surface Active Protein 0.54 40.0 3.77e-01 81.2% 65.8%
2d68A00 1.20.960.40 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.53 35.0 3.44e-01 93.8% 60.0%
3d2eA06 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.53 40.0 3.33e-01 81.2% 52.2%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.53 45.0 4.15e-01 100.0% 75.3%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.52 46.0 3.81e-01 100.0% 83.3%
1vw4T01 6.10.330.20 Special › Helix non-globular › Monooxygenase › 0.52 43.0 3.69e-01 100.0% 59.8%
2ntxA02 1.20.58.1310 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 2 0.51 43.0 3.79e-01 100.0% 63.1%
2wzkA02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.51 46.0 3.65e-01 100.0% 52.8%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 43.0 3.98e-01 98.4% 81.0%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.51 44.0 3.77e-01 100.0% 84.4%
6k9pB02 1.20.1300.20 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 0.51 40.0 3.16e-01 100.0% 38.8%
3u3iA02 1.20.58.1110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 44.0 3.74e-01 100.0% 63.9%
4dloB02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 42.0 3.59e-01 100.0% 56.4%
3gr3A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.50 38.0 2.63e-01 81.2% 58.4%
5je8B02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.50 44.0 3.53e-01 100.0% 72.7%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.50 41.0 3.89e-01 92.2% 96.2%
5m0nA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.50 43.0 2.68e-01 100.0% 49.6%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995681 3788.1.1.0 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) 0.78 57.0 5.75e-01 96.9% 76.9%
1159106 536.1.1.1 alpha arrays › beta-catenin-interacting protein ICAT › beta-catenin-interacting protein ICAT › beta-catenin-interacting protein ICAT › ICAT 0.78 54.0 6.24e-01 71.9% 100.0%
3379868 148.1.3.277 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › LETM1_RBD 0.77 54.0 5.01e-01 84.4% 58.7%
3844040 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.75 48.0 4.84e-01 70.3% 64.6%
4508282 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.71 53.0 3.91e-01 79.7% 81.2%
3576709 3748.1.1.0 extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain 0.71 47.0 3.71e-01 70.3% 38.6%
3185917 375.1.9.12 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › Wbp11 0.67 47.0 4.31e-01 87.5% 55.3%
4946473 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 57.0 5.06e-01 92.2% 83.3%
2485668 7025.1.1.2 alpha bundles › LIN9-LIN52 heterodimer › LIN9-LIN52 heterodimer › LIN9-LIN52 heterodimer › LIN9_C 0.63 46.0 4.23e-01 84.4% 59.5%
3686172 109.4.1.496 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec5 0.62 54.0 3.12e-01 100.0% 10.9%
3438527 219.1.1.23 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB 0.62 52.0 3.44e-01 92.2% 35.2%
3232821 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.61 54.0 3.85e-01 100.0% 80.0%
4066056 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.61 46.0 3.79e-01 81.2% 46.1%
3468130 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 42.0 2.88e-01 93.8% 19.6%
3707987 109.4.1.917 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TT21_N 0.60 48.0 3.30e-01 95.3% 42.2%
3941104 3930.1.1.0 alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.60 47.0 3.65e-01 84.4% 83.6%
4270503 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.60 41.0 3.78e-01 71.9% 68.2%
3297570 109.4.1.1308 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, TPR_24 0.59 44.0 2.97e-01 100.0% 20.8%
3400371 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.59 39.0 3.49e-01 100.0% 46.3%
4668964 604.9.1.0 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.59 41.0 3.73e-01 71.9% 68.2%
3805799 109.4.1.1275 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long, TPR_24 0.59 40.0 2.47e-01 98.4% 11.2%
4646933 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.58 46.0 4.35e-01 84.4% 100.0%
3616157 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.58 52.0 4.56e-01 100.0% 83.2%
4015612 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.58 42.0 3.86e-01 95.3% 58.8%
4493879 4992.1.1.23 extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N 0.58 41.0 3.50e-01 82.8% 44.5%
3728304 604.12.1.24 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF6604 0.57 48.0 4.26e-01 100.0% 65.0%
4211999 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.56 50.0 3.98e-01 100.0% 86.9%
4958436 2008.1.1.217 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UvrD-helicase 0.56 47.0 2.62e-01 96.9% 7.9%
3723892 5059.1.1.3 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.55 47.0 3.17e-01 100.0% 69.0%
3957298 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.55 43.0 3.93e-01 100.0% 63.3%
4025009 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.55 46.0 4.22e-01 100.0% 70.6%
3645559 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.54 40.0 3.68e-01 98.4% 57.8%
3448385 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.54 45.0 3.85e-01 100.0% 54.8%
4146104 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.54 39.0 3.60e-01 81.2% 58.8%
4981747 632.15.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.54 38.0 3.86e-01 85.9% 73.8%
3240652 109.4.1.643 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG2_C 0.54 47.0 2.75e-01 100.0% 13.9%
3543090 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 47.0 4.00e-01 100.0% 81.0%
2141316 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.52 39.0 3.33e-01 84.4% 46.5%
4321884 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.52 42.0 3.77e-01 100.0% 63.4%
4024393 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.51 44.0 4.16e-01 100.0% 83.7%
3857799 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.51 41.0 3.54e-01 100.0% 54.3%
3883666 603.1.1.8 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Spectrin_2 0.51 45.0 4.19e-01 100.0% 85.0%
3791227 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.51 35.0 3.29e-01 85.9% 57.7%