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KT624200.1__AMM45050.1__SP15_245__00252

Bact-Vir

KT624200.1__AMM45050.1__SP15_245__00252

Identity

Accession:
KT624200 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-59
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r5gA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.71 37.0 2.51e-01 100.0% 14.9%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.69 54.0 5.57e-01 86.2% 89.1%
1mhyD00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.66 47.0 2.74e-01 75.9% 9.4%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.63 46.0 4.31e-01 100.0% 61.8%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 44.0 3.66e-01 93.1% 40.9%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 45.0 3.82e-01 96.6% 44.1%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.60 40.0 2.99e-01 89.7% 26.4%
3rmhB00 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 53.0 4.06e-01 100.0% 74.4%
2ettA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 52.0 4.05e-01 100.0% 71.1%
4l80D00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.59 39.0 2.45e-01 96.6% 11.6%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 50.0 3.92e-01 100.0% 71.6%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.59 51.0 3.98e-01 98.3% 52.0%
4cllA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.58 41.0 2.81e-01 74.1% 61.9%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 39.0 3.37e-01 93.1% 42.3%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.58 43.0 3.74e-01 94.8% 52.2%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 46.0 3.68e-01 100.0% 43.0%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 47.0 4.02e-01 100.0% 86.8%
1flcB00 3.90.20.10 Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B › 0.57 38.0 2.77e-01 100.0% 25.3%
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.56 39.0 3.20e-01 72.4% 93.7%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 42.0 3.52e-01 81.0% 48.5%
3r5xD02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 40.0 3.04e-01 77.6% 56.8%
3pubA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 38.0 2.85e-01 72.4% 39.8%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 48.0 3.90e-01 100.0% 78.4%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.55 40.0 3.28e-01 96.6% 38.3%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 3.35e-01 86.2% 79.4%
1g6zA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 39.0 3.71e-01 87.9% 62.9%
1qviA01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.55 47.0 3.84e-01 100.0% 73.9%
6fu4A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 46.0 3.41e-01 100.0% 50.9%
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.54 36.0 3.92e-01 75.9% 100.0%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 46.0 3.96e-01 100.0% 84.2%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.38e-01 100.0% 38.7%
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.53 45.0 3.15e-01 100.0% 28.6%
2zxrA01 2.40.50.460 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 39.0 2.95e-01 82.8% 46.2%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.52 40.0 3.70e-01 94.8% 64.9%
2o95B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 35.0 2.64e-01 72.4% 41.5%
4bs9A04 3.30.40.250 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.52 39.0 3.46e-01 84.5% 88.9%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 44.0 3.78e-01 94.8% 64.8%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.51 43.0 3.42e-01 100.0% 57.1%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.51 40.0 3.15e-01 100.0% 41.2%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.51 37.0 3.41e-01 77.6% 64.1%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.51 44.0 3.59e-01 100.0% 62.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3803892 376.1.2.16 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT 0.82 59.0 5.67e-01 75.9% 76.9%
5017154 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.81 65.0 4.89e-01 100.0% 37.0%
3364063 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.79 60.0 4.51e-01 100.0% 34.3%
4977157 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.78 52.0 5.86e-01 74.1% 88.9%
3714703 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.77 59.0 4.88e-01 100.0% 48.0%
5000498 896.1.1.1 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.72 49.0 4.86e-01 94.8% 68.3%
3995204 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.71 64.0 6.15e-01 100.0% 86.2%
3701675 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.70 64.0 6.03e-01 100.0% 94.1%
5045085 377.1.2.1 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.68 54.0 4.95e-01 89.7% 67.5%
2035461 3380.1.1.1 a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Lsr2 0.68 53.0 5.46e-01 86.2% 87.5%
3930986 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.68 61.0 4.99e-01 100.0% 59.0%
3260099 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 45.0 3.94e-01 100.0% 46.7%
4019898 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.65 56.0 4.75e-01 100.0% 97.0%
4293536 4232.1.1.0 few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 0.64 43.0 4.51e-01 72.4% 80.0%
3205743 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.63 40.0 3.12e-01 72.4% 31.7%
3164102 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.62 39.0 4.37e-01 87.9% 82.2%
5022351 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.60 46.0 3.19e-01 98.3% 24.6%
4973804 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 43.0 3.96e-01 93.1% 58.7%
3648115 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.60 51.0 3.99e-01 100.0% 46.7%
5081495 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 53.0 4.14e-01 98.3% 55.0%
3217638 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 41.0 3.78e-01 89.7% 56.0%
3902875 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 43.0 4.18e-01 89.7% 70.8%
4979786 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.59 41.0 3.26e-01 100.0% 35.0%
4023312 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 50.0 3.99e-01 100.0% 88.0%
3783181 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 44.0 3.70e-01 98.3% 45.5%
3538869 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.58 50.0 3.67e-01 100.0% 36.4%
3709649 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.57 48.0 3.84e-01 100.0% 68.5%
3266842 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 48.0 3.87e-01 100.0% 79.2%
1489902 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 47.0 4.02e-01 100.0% 86.8%
3868175 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.56 42.0 2.46e-01 79.3% 73.9%
3792405 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 47.0 2.77e-01 100.0% 11.3%
3619859 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.56 49.0 3.93e-01 100.0% 72.5%
5072273 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 3.80e-01 96.6% 47.5%
3264168 376.1.3.22 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › STL11_N 0.56 45.0 3.63e-01 100.0% 89.6%
3927894 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.56 47.0 3.68e-01 100.0% 65.9%
None 0.55 45.0 3.27e-01 100.0% 60.5%
None 0.55 45.0 3.51e-01 100.0% 83.3%
4619943 376.1.3.22 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › STL11_N 0.55 45.0 3.60e-01 100.0% 86.7%
4101910 376.1.3.22 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › STL11_N 0.55 44.0 3.50e-01 98.3% 82.1%
4390303 5.1.3.238 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 0.55 39.0 2.32e-01 81.0% 21.2%
3636596 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 40.0 4.24e-01 87.9% 90.0%
3388724 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 44.0 3.70e-01 100.0% 50.0%
3605369 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 38.0 3.91e-01 84.5% 78.2%
4308725 304.48.1.4 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.54 43.0 2.91e-01 87.9% 39.5%
3386302 3186.1.1.1 a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook 0.53 33.0 2.96e-01 70.7% 41.2%
3553448 376.1.3.22 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › STL11_N 0.53 43.0 3.93e-01 98.3% 87.1%
5029496 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.53 46.0 3.62e-01 100.0% 60.5%
4613966 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 36.0 3.83e-01 70.7% 86.0%
4027686 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.53 42.0 4.33e-01 94.8% 92.7%
3604446 2004.1.1.480 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.53 44.0 2.53e-01 96.6% 74.4%
3593319 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.53 39.0 2.85e-01 82.8% 89.2%
3784382 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 43.0 3.29e-01 96.6% 96.8%
4797400 220.3.1.5 beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop_FD, PH_Rhabdo_glycop 0.53 32.0 3.48e-01 96.6% 75.0%
4595466 3572.1.1.2 a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 › Cas_Csa5 0.52 38.0 3.11e-01 98.3% 38.4%
3550551 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.52 35.0 2.33e-01 100.0% 16.5%
3577911 220.1.1.15 beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.52 44.0 3.40e-01 100.0% 40.0%
3505867 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.51 41.0 3.86e-01 96.6% 85.3%
4492006 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.51 43.0 2.79e-01 96.6% 98.1%
4043017 2.1.1.173 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RADX 0.50 41.0 3.07e-01 94.8% 53.8%