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ALJ99664.1

Arc-Vir

KT809302__ALJ99664.1__SS136-01__00001

Identity

Accession:
KT809302 ↗
Protein ID:
ALJ99664.1 ↗
Kingdom:
archaea

Quality

73.4 mean pLDDT

Taxonomy

Helvetiavirae› Dividoviricota› Laserviricetes› Halopanivirales› Sphaerolipoviridae› Alphasphaerolipovirus› Haloarcula_californiae_icosahedral_virus_1

TaxID: 1735722

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 46-134
PDB
Domain cluster: rep: MK002701__AYM00289.1__PhiH1-215__00043__D3-81
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 53.0 4.87e-01 87.6% 98.3%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 42.0 4.66e-01 76.4% 83.8%
2ok7A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 53.0 4.87e-01 86.5% 95.5%
1e62A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 52.0 4.57e-01 86.5% 95.3%
1ddgA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 52.0 4.77e-01 87.6% 93.0%
3k0xA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 42.0 4.11e-01 97.8% 61.6%
2ar5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 51.0 4.69e-01 89.9% 95.7%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 54.0 4.19e-01 98.9% 64.3%
4dqlB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 51.0 4.74e-01 87.6% 94.5%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 50.0 4.47e-01 91.0% 96.2%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 52.0 4.65e-01 96.6% 93.8%
2hdlA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 41.0 4.38e-01 76.4% 81.8%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 47.0 5.00e-01 98.9% 98.7%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 52.0 4.86e-01 98.9% 94.8%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 48.0 4.33e-01 88.8% 91.9%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 47.0 4.30e-01 88.8% 94.3%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.58 47.0 4.23e-01 87.6% 65.0%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 44.0 4.03e-01 97.8% 60.5%
3tj4A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 45.0 4.06e-01 97.8% 61.0%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 48.0 4.34e-01 95.5% 96.8%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 49.0 4.92e-01 100.0% 95.6%
4o4oA00 2.40.128.590 Mainly Beta › Beta Barrel › Lipocalin › CpcT/CpeT domain 0.56 41.0 3.25e-01 77.5% 53.3%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 50.0 4.86e-01 100.0% 92.9%
3i6eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 46.0 4.40e-01 88.8% 100.0%
5uj1A03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.55 44.0 3.62e-01 87.6% 56.1%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 44.0 4.04e-01 100.0% 64.0%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.55 35.0 3.86e-01 80.9% 81.7%
2konA00 3.30.160.350 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 41.0 4.29e-01 88.8% 89.0%
2cayB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.50e-01 77.5% 99.2%
2q03A00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.54 43.0 3.78e-01 86.5% 94.0%
6gmhH01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 48.0 4.10e-01 98.9% 99.3%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 47.0 4.54e-01 100.0% 89.3%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.53 42.0 2.99e-01 87.6% 100.0%
3o2uA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 40.0 3.39e-01 83.1% 87.7%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 35.0 3.84e-01 93.3% 87.3%
2e9xD02 3.40.5.60 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.51 26.0 3.13e-01 91.0% 73.3%
3iayA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 43.0 4.25e-01 100.0% 87.8%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5074618 304.48.1.31 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Cas10-Cmr2_palm2 0.71 58.0 3.96e-01 88.8% 39.7%
3239340 2.1.1.126 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272 0.70 53.0 5.62e-01 97.8% 88.7%
4602887 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 52.0 5.64e-01 98.9% 94.6%
3961045 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 55.0 5.34e-01 97.8% 76.0%
3742215 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.67 56.0 5.64e-01 100.0% 90.0%
3289386 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 52.0 5.32e-01 97.8% 85.2%
3716770 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.65 48.0 4.57e-01 97.8% 65.7%
3997678 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 58.0 5.43e-01 100.0% 81.8%
5045871 2.1.1.17 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.65 47.0 5.18e-01 97.8% 98.6%
3250605 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.65 53.0 4.79e-01 91.0% 92.0%
4428249 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 53.0 4.49e-01 87.6% 77.9%
3618300 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 53.0 4.60e-01 87.6% 83.8%
3366703 2.1.1.157 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB2 0.64 57.0 4.94e-01 97.8% 67.4%
3594165 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 52.0 4.19e-01 87.6% 66.5%
3285634 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 49.0 4.97e-01 92.1% 81.1%
5010129 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 39.0 4.65e-01 91.0% 100.0%
3931247 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 52.0 4.44e-01 87.6% 80.7%
3281968 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 55.0 5.40e-01 100.0% 88.4%
4030446 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 52.0 4.24e-01 87.6% 69.7%
3285635 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 54.0 5.30e-01 100.0% 87.4%
3189396 2.1.1.29 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep-A_N 0.62 53.0 4.67e-01 100.0% 64.6%
3236475 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.62 53.0 4.63e-01 95.5% 97.8%
4591470 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.61 50.0 4.18e-01 87.6% 54.7%
5049324 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 55.0 5.15e-01 100.0% 90.9%
3838288 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 54.0 5.02e-01 100.0% 82.6%
4927408 2.3.1.0 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like 0.61 55.0 4.99e-01 100.0% 75.8%
4137022 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 52.0 4.49e-01 97.8% 87.6%
3871082 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.61 49.0 4.22e-01 91.0% 86.0%
4505972 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.60 38.0 2.58e-01 70.8% 17.5%
377 2.1.1.90 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › ssDBP 0.60 47.0 5.00e-01 98.9% 98.7%
3639782 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 50.0 4.47e-01 94.4% 87.7%
3813787 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.15e-01 79.8% 70.2%
3961460 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 47.0 4.06e-01 100.0% 52.7%
3955464 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 47.0 4.76e-01 100.0% 87.8%
4087511 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 53.0 4.94e-01 100.0% 89.1%
3997614 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 50.0 4.55e-01 97.8% 68.3%
396 2.2.1.8 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Pertus-S5-tox 0.59 52.0 5.03e-01 100.0% 89.8%
5055120 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.59 47.0 4.34e-01 87.6% 67.0%
3593482 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.58 52.0 5.02e-01 98.9% 97.0%
3783181 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 47.0 4.47e-01 89.9% 97.3%
3705431 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 52.0 4.82e-01 100.0% 95.7%
4985567 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 52.0 5.09e-01 100.0% 97.9%
3242400 2.1.1.119 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM10_OB 0.57 51.0 4.37e-01 100.0% 75.2%
3522960 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 47.0 4.08e-01 92.1% 75.2%
5019744 2.1.1.384 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30889 0.57 48.0 4.74e-01 97.8% 87.4%
5080083 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.57 46.0 4.17e-01 87.6% 66.7%
5003644 264.2.1.1 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.57 46.0 4.10e-01 87.6% 88.8%
5052285 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 39.0 3.76e-01 77.5% 61.0%
4929979 2.1.1.17 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.57 48.0 4.56e-01 100.0% 77.8%
5019817 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 51.0 4.74e-01 100.0% 84.5%
5068666 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 51.0 4.76e-01 100.0% 83.6%
5068667 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.57 51.0 4.83e-01 100.0% 87.6%
5025423 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.56 43.0 4.08e-01 98.9% 67.3%
3406278 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 45.0 3.99e-01 87.6% 82.3%
5064366 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 50.0 4.88e-01 100.0% 92.0%
5001820 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 50.0 4.81e-01 100.0% 92.0%
3965228 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 49.0 4.80e-01 100.0% 97.9%
3187684 1.1.7.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.56 44.0 3.80e-01 87.6% 76.6%
3909994 2.3.1.1 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › TIMP 0.55 47.0 3.93e-01 100.0% 78.0%
5033499 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.55 49.0 4.72e-01 100.0% 87.6%
5001821 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.55 49.0 4.67e-01 100.0% 88.6%
3962565 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 46.0 4.43e-01 97.8% 82.0%
3876143 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 46.0 4.10e-01 95.5% 79.3%
3935534 375.1.9.2 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › SANTA 0.55 40.0 3.49e-01 77.5% 66.7%
4955354 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.54 43.0 2.96e-01 85.4% 80.0%
5063726 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 43.0 4.22e-01 89.9% 96.0%
3702502 2.1.1.25 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.52 45.0 4.40e-01 100.0% 93.0%
3473243 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 37.0 3.38e-01 77.5% 58.5%
3275390 2.1.1.105 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NMD3_OB 0.51 46.0 4.14e-01 100.0% 90.0%
4926797 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.50 41.0 3.68e-01 97.8% 62.3%