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KT820175.1__ANH49048.1__X__00001

Bact-Vir

KT820175.1__ANH49048.1__X__00001

Identity

Accession:
KT820175 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ruegeria_phage_45A6

TaxID: 1851646

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 166-247
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6elqA01 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 40.0 3.23e-01 74.4% 88.1%
1ysyA00 1.10.8.370 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › nsp7 replicase 0.57 42.0 4.18e-01 92.7% 76.5%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.54 45.0 4.48e-01 95.1% 95.5%
4nqwA01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.54 46.0 4.62e-01 93.9% 91.7%
3pntA01 1.10.10.1660 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nicotine adenine dinucleotide glycohydrolase, helical linker domain 0.53 38.0 3.95e-01 100.0% 84.0%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 35.0 3.06e-01 72.0% 67.9%
2ppqA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.51 41.0 3.15e-01 92.7% 81.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3781420 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.73 55.0 5.90e-01 92.7% 94.3%
4009213 103.4.1.22 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF30394 0.71 62.0 6.00e-01 93.9% 93.3%
4993602 632.23.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.59 40.0 4.36e-01 72.0% 92.1%
3527609 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.55 46.0 3.79e-01 97.6% 98.2%
4933380 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.52 43.0 3.02e-01 95.1% 96.6%
4185708 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.51 43.0 4.12e-01 95.1% 83.2%
D2 medium residues 1-120
PDB
Domain cluster: rep: MK291442.1__AZV00258.1__pkon1_p29__00029__D1-112
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07120.18 best DUF1376 44.8 1.90e-11 73.3% 96.5%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nriB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 59.0 6.71e-01 70.0% 91.3%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 53.0 5.88e-01 71.7% 99.0%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 51.0 5.21e-01 70.0% 79.1%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 5.39e-01 70.0% 91.5%
1zybA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 44.0 3.57e-01 74.2% 78.0%
3c7jA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 4.31e-01 70.8% 95.6%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.51 37.0 3.63e-01 75.0% 77.7%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4989840 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 49.0 4.43e-01 70.0% 61.3%
4598188 101.1.2.242 ↗ alpha arrays › HTH › HTH › winged helix domain › RepL 0.69 51.0 5.12e-01 75.8% 75.8%
4993073 101.1.2.181 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.69 49.0 5.48e-01 72.5% 97.8%
3358714 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 3.30e-01 78.3% 36.7%
5048676 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.64 39.0 4.28e-01 72.5% 74.0%
5007550 101.1.2.932 ↗ alpha arrays › HTH › HTH › winged helix domain › wHTH-PRTase_assc 0.63 44.0 4.49e-01 74.2% 71.7%
3284963 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 43.0 4.12e-01 74.2% 70.4%
2137768 101.1.2.49 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.50 42.0 3.68e-01 88.3% 98.8%