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KT820175.1__ANH49078.1__X__00031

Bact-Vir

KT820175.1__ANH49078.1__X__00031

Identity

Accession:
KT820175 ↗
Kingdom:
phage

Quality

92.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ruegeria_phage_45A6

TaxID: 1851646

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-78
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f4sA02 1.10.40.80 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › 0.68 50.0 5.14e-01 97.1% 82.8%
3ez0C00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.67 56.0 3.97e-01 92.6% 52.9%
3mvuA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.64 52.0 3.70e-01 92.6% 41.1%
4wpzA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.63 50.0 3.11e-01 85.3% 62.8%
1j8yF01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.63 52.0 4.88e-01 100.0% 74.4%
1lfkA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.63 50.0 3.12e-01 86.8% 41.3%
6k93A00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.61 52.0 3.66e-01 100.0% 69.0%
3djbA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.60 51.0 4.66e-01 98.5% 97.9%
2z15A00 3.90.640.90 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Anti-proliferative protein, N-terminal domain 0.60 53.0 4.45e-01 100.0% 68.1%
3b0cW00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.60 45.0 4.45e-01 82.4% 91.8%
3pdiA02 3.40.50.12380 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase MoFe cofactor biosynthesis protein NifE, C-terminal 0.59 47.0 3.14e-01 86.8% 57.1%
1z72A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.58 50.0 3.55e-01 97.1% 54.2%
3oo3A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 49.0 3.08e-01 92.6% 42.0%
4yshA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 47.0 3.36e-01 94.1% 67.0%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 43.0 4.24e-01 88.2% 76.0%
4fzwA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.57 40.0 4.28e-01 76.5% 100.0%
2kobA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.56 45.0 4.07e-01 88.2% 96.8%
4jrfA03 1.10.20.150 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.56 45.0 3.88e-01 86.8% 73.6%
1s4kA00 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.55 45.0 3.78e-01 91.2% 78.3%
1or7B01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.54 47.0 4.28e-01 100.0% 86.2%
3qxyA02 3.90.1420.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain 0.53 46.0 3.51e-01 98.5% 41.9%
4gkfA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.52 44.0 3.54e-01 100.0% 61.0%
2w0gA00 1.20.58.610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain 0.52 43.0 3.56e-01 95.6% 73.6%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.51 42.0 3.50e-01 97.1% 63.4%
3aq1B02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.51 43.0 3.74e-01 98.5% 93.6%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031347 5065.1.1.1 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.78 68.0 4.47e-01 97.1% 25.1%
4984673 5065.1.1.1 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.77 67.0 4.47e-01 97.1% 26.0%
4927723 5065.1.1.1 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.77 67.0 4.43e-01 97.1% 25.1%
5079060 5065.1.1.1 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.76 66.0 4.33e-01 98.5% 23.6%
4959473 148.1.3.411 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › HAAS 0.76 62.0 6.38e-01 89.7% 96.9%
5084048 3831.1.1.15 ↗ alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › HAAS 0.76 66.0 6.15e-01 98.5% 85.9%
5034715 5065.1.1.1 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.75 66.0 4.35e-01 97.1% 25.3%
5048048 4957.1.1.9 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › HAAS 0.75 65.0 6.31e-01 97.1% 92.0%
4659005 5065.1.1.1 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.74 64.0 4.24e-01 97.1% 25.0%
3659606 3361.1.1.5 ↗ alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › PF28983 0.72 64.0 5.39e-01 100.0% 73.0%
4446282 3345.1.1.1 ↗ alpha arrays › MRG domain › MRG domain › MRG domain › MRG 0.67 55.0 4.16e-01 94.1% 67.4%
3788953 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.66 56.0 5.21e-01 100.0% 86.7%
3619569 4072.1.1.1 ↗ a+b complex topology › BTG domain-like › BTG domain-like › BTG domain-like › BTG 0.66 56.0 4.61e-01 97.1% 63.1%
5077964 3355.1.1.41 ↗ alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DUF401 0.65 48.0 3.02e-01 79.4% 64.9%
3787527 142.3.1.1 ↗ alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Sld7_C 0.63 54.0 5.07e-01 98.5% 92.9%
3669572 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 53.0 5.19e-01 98.5% 94.7%
4957690 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.62 54.0 4.49e-01 100.0% 65.6%
5010730 150.1.2.5 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › TENA_THI-4 0.62 53.0 3.76e-01 97.1% 54.0%
4547686 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.61 43.0 4.35e-01 73.5% 72.9%
4149277 167.1.1.1 ↗ alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.61 51.0 4.13e-01 100.0% 70.3%
4952829 160.1.1.0 ↗ alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase 0.60 50.0 3.92e-01 97.1% 48.8%
3209901 150.1.1.156 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › PIGO_PIGG 0.59 51.0 3.84e-01 100.0% 78.9%
3228384 544.1.1.0 ↗ alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 0.59 50.0 4.37e-01 100.0% 88.5%
5074726 633.10.1.0 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.59 45.0 4.22e-01 98.5% 68.2%
3845840 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 43.0 4.04e-01 100.0% 64.7%
4057642 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 50.0 4.06e-01 100.0% 55.4%
3620740 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 46.0 4.15e-01 91.2% 70.5%
3516452 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.51 42.0 2.95e-01 94.1% 41.3%
D2 high residues 90-171
PDB
Domain cluster: rep: MK449009.1__QBX31949.1__Javan88_0014__00014__D21-94