←Back to structures

KT870145.1__AMO44253.1__DSS3P8_195__00195

Bact-Vir

KT870145.1__AMO44253.1__DSS3P8_195__00195

Identity

Accession:
KT870145 ↗
Kingdom:
phage

Quality

96.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roseobacter_phage_DSS3P8

TaxID: 1735562

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-48
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.72 58.0 5.93e-01 90.7% 97.6%
3hdtA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 54.0 3.54e-01 86.0% 65.5%
3fdiB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 53.0 3.44e-01 86.0% 69.3%
3lmmC04 1.10.10.2340 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 54.0 4.40e-01 100.0% 47.1%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 53.0 4.28e-01 100.0% 49.4%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.24e-01 100.0% 52.6%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.62e-01 100.0% 70.0%
1r4aE00 1.10.220.60 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › GRIP domain 0.61 42.0 4.01e-01 100.0% 60.8%
1ku3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.57e-01 100.0% 72.1%
1f20A01 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.61 53.0 3.54e-01 97.7% 27.6%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.21e-01 90.7% 60.3%
1fi2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 49.0 3.25e-01 100.0% 55.2%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.60 43.0 3.60e-01 100.0% 40.4%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 50.0 3.69e-01 100.0% 74.2%
2hr3D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 4.33e-01 100.0% 69.4%
1y7oB00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.59 47.0 3.19e-01 93.0% 39.3%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 3.63e-01 100.0% 37.2%
8e9gE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.59 48.0 4.30e-01 95.3% 73.0%
3r4kB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 4.08e-01 100.0% 61.9%
3gruA02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.59 45.0 3.87e-01 97.7% 87.2%
1fxzA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 49.0 3.33e-01 97.7% 65.9%
3gg7A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.58 48.0 3.07e-01 100.0% 31.7%
1j5yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.27e-01 100.0% 68.8%
2r3sB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 3.87e-01 97.7% 50.6%
2xrnB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.08e-01 100.0% 64.1%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 3.61e-01 97.7% 39.4%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.56 46.0 3.93e-01 97.7% 70.9%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 43.0 4.24e-01 100.0% 83.3%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 4.00e-01 97.7% 64.1%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.71e-01 100.0% 58.2%
2fa5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 3.31e-01 100.0% 34.5%
4pswA03 1.10.10.390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 46.0 4.32e-01 97.7% 81.5%
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 4.31e-01 100.0% 93.3%
2o0yB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.86e-01 100.0% 67.7%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 42.0 3.16e-01 100.0% 71.4%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.69e-01 97.7% 57.5%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 43.0 3.87e-01 97.7% 92.4%
2e9yB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.52 40.0 2.44e-01 90.7% 17.6%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 38.0 3.47e-01 88.4% 80.6%
7fsfA02 3.30.56.80 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.52 38.0 3.30e-01 81.4% 59.4%
3eupB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 41.0 2.81e-01 100.0% 25.5%
4gxbA02 1.20.80.60 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.51 42.0 3.79e-01 100.0% 66.1%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3960509 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.71 60.0 5.34e-01 100.0% 70.8%
5005264 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 61.0 4.11e-01 100.0% 81.2%
3942532 375.1.1.39 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Prim_Zn_Ribbon 0.70 56.0 4.54e-01 90.7% 78.8%
4959014 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 54.0 4.58e-01 100.0% 54.3%
3640032 101.1.3.9 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Myb_DNA-bind_8 0.67 55.0 5.16e-01 97.7% 83.6%
4977009 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 4.80e-01 100.0% 61.5%
4605981 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.65 53.0 4.66e-01 100.0% 90.0%
5000849 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 54.0 4.73e-01 100.0% 61.4%
5040184 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 56.0 4.51e-01 100.0% 73.8%
5000156 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 50.0 4.92e-01 100.0% 88.0%
5076666 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.60 51.0 4.16e-01 100.0% 52.9%
2842 101.1.10.10 ↗ alpha arrays › HTH › HTH › Cyclin-like › K-cyclin_vir_C 0.59 50.0 3.88e-01 100.0% 88.1%
1286954 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.59 39.0 2.73e-01 79.1% 18.7%
4016103 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 47.0 4.62e-01 100.0% 86.0%
3727217 101.1.2.384 ↗ alpha arrays › HTH › HTH › winged helix domain › Myb_DNA-bind_8 0.58 48.0 4.65e-01 100.0% 86.0%
3587349 101.1.2.6 ↗ alpha arrays › HTH › HTH › winged helix domain › GntR 0.58 47.0 4.02e-01 97.7% 54.7%
2758207 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.58 48.0 4.07e-01 100.0% 54.7%
4982117 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 48.0 4.12e-01 100.0% 66.7%
3286028 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.57 46.0 3.97e-01 100.0% 54.7%
3989015 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 3.61e-01 100.0% 48.6%
3947986 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.57 46.0 4.29e-01 100.0% 76.7%
3365751 101.1.1.253 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_CLF_N 0.57 47.0 4.21e-01 100.0% 66.2%
4137751 102.1.1.24 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.56 48.0 3.77e-01 100.0% 48.4%
4591208 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.56 47.0 3.08e-01 100.0% 23.0%
4955409 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.55 44.0 2.91e-01 100.0% 25.5%
1346824 101.1.2.6 ↗ alpha arrays › HTH › HTH › winged helix domain › GntR 0.55 45.0 3.41e-01 97.7% 36.2%
3243495 101.1.1.289 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.55 44.0 4.18e-01 100.0% 81.8%
3466087 101.1.1.253 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_CLF_N 0.55 43.0 4.20e-01 100.0% 86.0%
3825697 101.1.1.253 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_CLF_N 0.54 42.0 4.07e-01 100.0% 78.2%
3219867 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 45.0 3.69e-01 100.0% 52.9%
3759250 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.54 42.0 4.20e-01 90.7% 86.7%
4033957 4070.1.1.4 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50B 0.53 43.0 2.75e-01 93.0% 71.7%
4929470 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.53 43.0 3.39e-01 100.0% 43.8%
1511065 101.1.2.6 ↗ alpha arrays › HTH › HTH › winged helix domain › GntR 0.52 43.0 3.34e-01 100.0% 41.7%
3986601 101.1.2.142 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.52 42.0 3.59e-01 100.0% 56.2%
4467398 101.1.2.81 ↗ alpha arrays › HTH › HTH › winged helix domain › Put_DNA-bind_N 0.52 39.0 3.64e-01 100.0% 64.3%
1153586 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.52 33.0 2.46e-01 79.1% 21.4%
3795109 101.1.15.1 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.51 39.0 3.89e-01 100.0% 94.0%
4508255 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.50 40.0 3.10e-01 100.0% 86.7%