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KT887557.1__ALY08128.1__X__00005

Bact-Vir

KT887557.1__ALY08128.1__X__00005

Identity

Accession:
KT887557 ↗
Kingdom:
phage

Quality

90.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 594-674
PDB
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.79 73.0 6.58e-01 100.0% 85.3%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.79 73.0 6.99e-01 100.0% 97.8%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.78 72.0 6.96e-01 100.0% 93.3%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.76 69.0 6.60e-01 100.0% 96.7%
6o38A03 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.75 66.0 6.63e-01 96.3% 98.8%
2xyqA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 54.0 3.74e-01 100.0% 50.9%
1hf2A02 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.60 51.0 4.70e-01 100.0% 72.6%
1vq8O00 3.100.10.10 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › 0.51 37.0 3.36e-01 97.5% 54.8%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
185692 520.2.1.1 beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.79 73.0 6.58e-01 100.0% 85.3%
2581340 520.2.1.1 beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.78 72.0 7.08e-01 100.0% 96.6%
2581338 520.2.1.1 beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.76 69.0 6.56e-01 100.0% 93.8%
4561709 520.2.1.1 beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.75 69.0 6.70e-01 100.0% 96.7%
3942383 520.2.1.0 beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE 0.72 64.0 6.22e-01 100.0% 94.4%
4529236 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.68 60.0 4.20e-01 100.0% 60.7%
4237289 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.67 58.0 4.13e-01 100.0% 62.3%
4144650 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.61 52.0 3.78e-01 100.0% 52.3%
4041561 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.60 52.0 3.75e-01 98.8% 51.4%
4472803 207.5.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.60 51.0 4.80e-01 100.0% 77.0%
7233 207.5.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.60 51.0 4.68e-01 100.0% 72.0%
3786676 207.4.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC 0.59 46.0 3.74e-01 85.2% 47.7%
D2 medium residues 14-61
PDB
D3 medium residues 118-231
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27114.1 best Phage_tail_beta 44.1 3.20e-11 55.3% 93.9%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a1pB00 3.30.860.10 Alpha Beta › 2-Layer Sandwich › 30s Ribosomal Protein S19; Chain A › Ribosomal protein S19/S15 0.58 34.0 3.79e-01 84.2% 75.3%
1tg7A02 2.102.20.10 Mainly Beta › 3-layer Sandwich › beta-galactosidase, domain 2 › Beta-galactosidase, domain 2 0.55 38.0 3.32e-01 71.1% 93.4%
2o95B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 38.0 3.34e-01 72.8% 58.5%
4rcmB00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.54 37.0 3.36e-01 71.1% 92.5%
5dnoA00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.52 40.0 3.56e-01 82.5% 67.1%
2ar1A00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.50 36.0 3.25e-01 73.7% 72.6%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2409669 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.83 62.0 4.15e-01 76.3% 23.1%
4859120 3856.1.2.0 beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain 0.72 59.0 6.36e-01 90.4% 100.0%
2491347 3856.1.2.1 beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.72 53.0 5.97e-01 75.4% 97.7%
3164979 3856.1.2.1 beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.68 52.0 5.92e-01 81.6% 100.0%
3568839 304.107.1.1 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.53 36.0 2.56e-01 71.9% 22.6%
3400743 314.1.1.6 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.53 43.0 3.32e-01 89.5% 69.3%
3279780 2008.1.1.20 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.53 40.0 3.35e-01 80.7% 91.6%
3965428 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.52 38.0 3.95e-01 77.2% 93.3%
5048986 2008.1.1.155 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc 0.51 37.0 3.19e-01 75.4% 72.1%
4282238 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 44.0 2.70e-01 99.1% 91.1%
D4 medium residues 232-590
PDB
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zppA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.77 74.0 6.95e-01 100.0% 93.8%
1ee6A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.74 42.0 5.63e-01 70.2% 100.0%
3gq8A01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.74 71.0 6.45e-01 100.0% 86.9%
1rmgA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.74 68.0 6.38e-01 99.4% 80.8%
2uvfB02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.74 71.0 6.50e-01 100.0% 93.3%
3jurA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.72 70.0 6.44e-01 100.0% 88.1%
1bheA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.72 68.0 6.68e-01 98.3% 92.3%
1hg8A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.72 66.0 6.74e-01 99.2% 98.0%
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.71 68.0 5.95e-01 100.0% 71.2%
4mxnB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.70 44.0 5.55e-01 81.9% 100.0%
3eqnA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.67 59.0 6.10e-01 97.2% 95.3%
4oj6C03 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.67 64.0 6.25e-01 100.0% 94.7%
3n6zA01 2.160.20.110 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.67 49.0 5.63e-01 89.1% 100.0%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.66 63.0 5.40e-01 100.0% 73.5%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.66 63.0 5.41e-01 100.0% 74.1%
3eqnA02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.64 60.0 6.03e-01 98.3% 99.2%
4kh3A00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.61 48.0 4.27e-01 98.9% 57.9%
3bh7B01 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.60 33.0 4.50e-01 76.3% 99.5%
1rwrA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.60 48.0 5.27e-01 93.6% 100.0%
4pmhA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.60 52.0 5.22e-01 97.2% 89.6%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4981313 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.82 52.0 6.37e-01 85.5% 93.8%
4980586 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.80 64.0 5.94e-01 100.0% 66.6%
4980411 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.80 60.0 6.63e-01 99.7% 91.3%
4942054 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.79 67.0 7.02e-01 99.7% 94.5%
5048709 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.78 52.0 6.11e-01 90.0% 92.3%
4554798 207.2.1.9 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase 0.78 44.0 5.69e-01 71.6% 93.8%
5040689 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.76 65.0 6.19e-01 100.0% 76.6%
5034576 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.76 48.0 5.80e-01 86.4% 90.4%
5078879 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.76 44.0 5.75e-01 95.3% 100.0%
3824788 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.76 66.0 6.75e-01 100.0% 92.7%
3264291 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.75 57.0 6.50e-01 93.9% 100.0%
3648137 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.75 69.0 6.90e-01 100.0% 91.9%
4952564 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.74 63.0 6.60e-01 100.0% 93.4%
5062670 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.74 59.0 6.55e-01 93.3% 100.0%
4010919 207.2.1.3 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_4 0.74 54.0 5.78e-01 90.8% 83.8%
4167706 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.74 70.0 6.66e-01 100.0% 85.6%
3709143 207.2.1.50 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › DGF-1_beta-sheet 0.74 64.0 6.28e-01 100.0% 83.9%
4446517 207.2.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3,Beta_helix 0.73 71.0 6.92e-01 100.0% 93.8%
3940754 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.73 56.0 6.27e-01 99.7% 98.2%
4943042 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.73 70.0 6.12e-01 100.0% 88.9%
4989914 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.72 64.0 6.20e-01 100.0% 82.8%
4946035 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.72 63.0 5.57e-01 100.0% 66.2%
None 0.72 69.0 6.66e-01 100.0% 89.5%
3805653 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.71 63.0 6.66e-01 94.2% 100.0%
3695217 207.6.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.71 44.0 5.12e-01 100.0% 83.1%
3252135 207.2.1.70 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Beta_helix 0.71 68.0 6.18e-01 100.0% 82.2%
3255127 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.70 61.0 6.42e-01 98.1% 99.7%
4943747 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.69 44.0 5.39e-01 99.4% 95.7%
4211588 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 67.0 6.04e-01 100.0% 91.8%
3634222 207.4.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C 0.69 33.0 4.88e-01 97.5% 100.0%
4942396 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.68 62.0 5.41e-01 100.0% 66.3%
4029787 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.68 38.0 4.77e-01 95.8% 85.2%
3385173 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.68 60.0 6.26e-01 91.9% 100.0%
3251267 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.67 62.0 6.10e-01 100.0% 90.4%
3256980 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.67 63.0 5.69e-01 97.5% 86.9%
3984525 207.2.1.25 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › AIDA 0.67 48.0 5.48e-01 100.0% 97.0%
3670547 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.65 59.0 5.93e-01 96.9% 92.6%
3585237 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.65 46.0 5.28e-01 92.2% 95.1%
3599244 207.4.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like 0.65 32.0 4.67e-01 86.1% 100.0%
3844607 207.6.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.64 57.0 5.87e-01 100.0% 98.3%
3732044 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.63 42.0 5.08e-01 91.9% 100.0%
3251103 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.63 56.0 4.90e-01 100.0% 64.4%
3982197 207.2.1.25 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › AIDA 0.62 54.0 5.12e-01 99.2% 78.7%
4995410 207.8.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.61 45.0 4.78e-01 88.9% 82.8%
1141999 207.2.1.25 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › AIDA 0.61 48.0 4.27e-01 98.9% 57.9%
4196233 207.8.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD,SufBD_N 0.56 47.0 4.47e-01 90.0% 73.5%
3979669 207.8.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD,SufBD_N 0.55 50.0 4.57e-01 96.4% 74.8%
3959841 207.8.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD 0.55 45.0 4.37e-01 88.6% 77.2%