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KT895374.1__ALN97749.1__Bp8pS_070__00070

Bact-Vir

KT895374.1__ALN97749.1__Bp8pS_070__00070

Identity

Accession:
KT895374 ↗
Kingdom:
phage

Quality

83.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Takahashivirus› Bacillus_phage_vB_BpuM-BpSp

TaxID: 1739968

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-92
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8gpsA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.69 61.0 5.88e-01 100.0% 95.2%
1ldjA02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.66 48.0 4.38e-01 76.1% 100.0%
2iw3B01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.66 57.0 3.98e-01 100.0% 52.3%
1l7aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 52.0 3.64e-01 100.0% 75.2%
3hzjC01 1.10.10.750 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ypt/Rab-GAP domain of gyp1p, domain 1 0.55 29.0 3.68e-01 72.8% 100.0%
2ii2A03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.53 40.0 3.93e-01 90.2% 75.5%
1a5tA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 46.0 3.84e-01 100.0% 56.9%
1u3dA03 1.10.579.10 Mainly Alpha › Orthogonal Bundle › DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 › DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.52 37.0 3.04e-01 90.2% 36.8%
3oziB00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.52 43.0 3.68e-01 97.8% 85.7%
1wjtA00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.52 42.0 4.06e-01 100.0% 80.6%
6j8eA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.50 32.0 3.07e-01 78.3% 54.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3830814 109.4.1.930 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_ECM29_C 0.67 59.0 4.03e-01 100.0% 58.2%
3609199 2003.1.5.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltr_RsmB-F 0.67 52.0 3.32e-01 85.9% 23.2%
1878011 109.4.1.1442 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_EF3_GNC1, HEAT_EF3_N 0.66 57.0 3.97e-01 100.0% 51.5%
3172093 604.1.1.132 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › KAR9 0.65 47.0 4.27e-01 77.2% 90.4%
4946749 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 55.0 4.42e-01 100.0% 63.7%
3539679 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.63 55.0 4.21e-01 100.0% 48.4%
4192521 109.4.1.177 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd3 0.63 54.0 4.24e-01 100.0% 69.0%
3178491 109.4.1.2222 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29413, PF29499 0.62 53.0 3.63e-01 100.0% 38.7%
3299589 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.62 53.0 3.32e-01 100.0% 25.3%
1889998 109.4.1.1259 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_PBS, HEAT_2 0.62 53.0 4.94e-01 100.0% 93.4%
3789112 109.4.1.1442 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_EF3_GNC1, HEAT_EF3_N 0.62 54.0 3.76e-01 100.0% 40.9%
3210034 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 53.0 4.06e-01 100.0% 57.0%
3445007 109.4.1.26 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PC_rep 0.61 51.0 4.32e-01 93.5% 68.8%
3911405 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.61 53.0 4.34e-01 100.0% 60.0%
3356444 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.60 51.0 4.86e-01 96.7% 97.3%
4308067 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.59 36.0 4.05e-01 71.7% 80.0%
3720704 109.4.1.955 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_EF3_GNC1 0.59 51.0 4.55e-01 100.0% 85.9%
3544324 109.3.1.33 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2,Ank_3 0.58 47.0 4.68e-01 88.0% 93.7%
None — 0.53 44.0 3.27e-01 91.3% 81.2%
5061173 2004.1.1.194 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2 0.53 45.0 2.90e-01 97.8% 69.9%
1338066 103.2.1.1 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › Ribonuc_red_lgN 0.53 32.0 2.91e-01 78.3% 41.7%
5031241 192.5.1.0 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.52 42.0 4.41e-01 90.2% 100.0%
5010958 4033.1.1.0 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like 0.51 40.0 4.17e-01 84.8% 94.1%
D2 medium residues 93-173
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h2zA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 41.0 3.35e-01 91.4% 99.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3517884 3896.1.1.0 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.66 58.0 3.70e-01 100.0% 27.6%
D3 medium residues 174-245
PDB
Domain cluster: rep: KT895374.1__ALN97871.1__Bp8pS_192__00192__D87-153
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dlqB01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 53.0 3.32e-01 100.0% 30.9%
3hjlA02 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.58 40.0 3.65e-01 73.6% 61.3%
2ozvA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 43.0 3.32e-01 98.6% 61.6%
1amiA02 3.40.1060.10 Alpha Beta › 3-Layer(aba) Sandwich › Aconitase; Domain 2 › Aconitase, Domain 2 0.50 42.0 3.75e-01 100.0% 76.1%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4949218 898.1.1.1 ↗ a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.57 40.0 2.99e-01 76.4% 35.6%
3602722 2006.1.4.9 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › RNase_Zc3h12a 0.56 39.0 3.22e-01 76.4% 42.7%
3728192 2003.1.1.22 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.56 46.0 3.74e-01 95.8% 72.7%
4977326 7512.1.1.8 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Epimerase_2 0.55 47.0 3.65e-01 100.0% 66.3%
3384269 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.55 39.0 2.63e-01 76.4% 79.7%
4972365 7512.1.1.8 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Epimerase_2 0.55 48.0 3.72e-01 100.0% 72.7%
5054623 7512.1.1.8 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Epimerase_2 0.55 47.0 3.72e-01 100.0% 92.5%
4941498 7512.1.1.8 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Epimerase_2 0.55 46.0 3.72e-01 100.0% 75.5%
5003741 7512.1.1.8 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Epimerase_2 0.53 45.0 3.63e-01 100.0% 74.8%
4956389 7512.1.1.8 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Epimerase_2 0.52 44.0 3.43e-01 98.6% 92.9%
3201877 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.51 43.0 3.72e-01 100.0% 67.5%
5003390 7512.1.1.8 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Epimerase_2 0.50 44.0 3.32e-01 100.0% 80.5%