Back to structures

KT895374.1__ALN97765.1__Bp8pS_086__00086

Bact-Vir

KT895374.1__ALN97765.1__Bp8pS_086__00086

Identity

Accession:
KT895374 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-83
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nbwA02 3.90.470.30 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Coenzyme B12-Dependent Enzyme linker domain 0.61 44.0 3.71e-01 76.8% 95.1%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 37.0 3.54e-01 73.2% 54.5%
6dw1A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.57 48.0 3.58e-01 93.9% 81.9%
6qwrA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.57 42.0 3.23e-01 79.3% 95.2%
1ok8A03 3.30.387.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 3 › Viral Envelope Glycoprotein, domain 3 0.56 38.0 3.89e-01 76.8% 71.6%
6h05A00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.56 40.0 2.93e-01 75.6% 75.8%
6d6tA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.55 46.0 3.48e-01 93.9% 81.4%
6gdxA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 39.0 3.61e-01 78.0% 57.9%
4afhE00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.55 47.0 3.58e-01 100.0% 72.2%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 36.0 3.46e-01 73.2% 57.4%
7pwfD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.54 40.0 3.92e-01 97.6% 73.0%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 34.0 3.31e-01 75.6% 56.5%
3hluA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 33.0 3.47e-01 91.5% 69.9%
4r6uA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.39e-01 87.8% 57.3%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.52 43.0 3.09e-01 92.7% 94.1%
3lvtA03 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.57e-01 87.8% 66.7%
2v5mA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.26e-01 75.6% 55.8%
2bg9C01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.51 42.0 3.20e-01 93.9% 79.4%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.51 37.0 3.65e-01 91.5% 71.0%
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 36.0 3.51e-01 76.8% 68.5%
2yqzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 42.0 3.32e-01 97.6% 49.2%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3324733 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.69 51.0 3.93e-01 78.0% 98.3%
5028718 223.8.1.0 a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain 0.67 49.0 4.49e-01 95.1% 60.0%
3649488 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.66 48.0 3.78e-01 75.6% 98.8%
3803575 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.63 41.0 4.93e-01 93.9% 100.0%
3963143 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.63 47.0 4.34e-01 89.0% 62.1%
4975579 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 52.0 4.22e-01 92.7% 54.2%
3474068 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.61 54.0 3.90e-01 100.0% 78.3%
4928530 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.60 44.0 4.47e-01 91.5% 80.0%
4928258 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.60 37.0 3.70e-01 73.2% 60.2%
4927291 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.59 38.0 3.76e-01 74.4% 61.2%
3623008 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 52.0 4.64e-01 100.0% 93.9%
167276 304.5.1.8 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF3240 0.58 39.0 3.85e-01 78.0% 63.3%
4931230 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.57 35.0 3.43e-01 72.0% 55.6%
3535528 929.1.1.0 beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.57 39.0 4.36e-01 79.3% 100.0%
5040667 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.56 39.0 3.70e-01 76.8% 59.2%
5038160 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.56 39.0 3.67e-01 75.6% 60.0%
3624333 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.56 49.0 3.55e-01 100.0% 80.0%
3508713 382.1.1.25 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › YjeJ 0.55 39.0 3.45e-01 95.1% 50.0%
3635611 328.1.1.3 a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 0.55 49.0 4.05e-01 97.6% 81.8%
3994520 11.12.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb 0.55 47.0 3.25e-01 93.9% 61.8%
5054032 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.55 47.0 3.10e-01 97.6% 21.9%
3665260 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 45.0 3.30e-01 89.0% 34.7%
5015958 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.55 39.0 3.67e-01 79.3% 59.6%
3541435 271.1.1.5 beta barrels › GFP-like › GFP-like › GFP-like › G2F 0.55 49.0 3.56e-01 100.0% 75.3%
3221989 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.55 46.0 3.45e-01 93.9% 82.9%
3619547 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.54 46.0 3.39e-01 93.9% 79.5%
3452245 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 48.0 3.19e-01 100.0% 25.4%
2485059 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.54 39.0 3.59e-01 79.3% 56.2%
5048918 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 47.0 4.08e-01 97.6% 78.1%
5069230 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 46.0 3.51e-01 100.0% 82.9%
3202886 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.18e-01 84.1% 56.7%
4972556 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 4.23e-01 91.5% 90.6%
4205746 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.52 37.0 3.50e-01 86.6% 61.0%
3839035 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 44.0 3.62e-01 98.8% 97.5%
3991064 319.1.1.11 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › SGS 0.51 41.0 3.49e-01 87.8% 64.0%
4950098 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.51 44.0 3.37e-01 97.6% 88.0%
3552097 11.1.1.242 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › RET_CLD3 0.51 42.0 3.60e-01 90.2% 88.9%
4443054 3115.1.1.9 a+b two layers › GP2-like › RplX-like › RplX-like › YjeJ 0.51 35.0 3.18e-01 85.4% 50.0%
4971679 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 44.0 3.25e-01 98.8% 82.7%
4116209 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.50 37.0 3.58e-01 78.0% 92.2%
D2 high residues 99-204
PDB
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.74 40.0 3.93e-01 99.1% 48.3%
5jtwA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 38.0 3.88e-01 99.1% 55.9%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 28.0 4.01e-01 75.5% 87.8%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 37.0 3.83e-01 100.0% 60.4%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.63 42.0 3.69e-01 100.0% 46.7%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 37.0 3.89e-01 100.0% 64.2%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.62 29.0 3.47e-01 78.3% 65.7%
3rb5A02 2.60.40.2030 Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain 0.62 34.0 3.26e-01 100.0% 45.6%
7q61A01 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 37.0 3.72e-01 100.0% 59.6%
4d7pA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.60 35.0 3.67e-01 99.1% 62.5%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 32.0 3.78e-01 84.9% 76.4%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.59 33.0 3.80e-01 77.4% 76.0%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.58 35.0 3.41e-01 100.0% 52.0%
3waiA02 2.60.40.3390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 33.0 3.54e-01 97.2% 65.6%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.57 36.0 3.37e-01 100.0% 51.1%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 33.0 4.04e-01 83.0% 92.4%
3hlkA01 2.60.40.2240 Mainly Beta › Sandwich › Immunoglobulin-like › Acyl-CoA thioester hydrolase/BAAT N-terminal domain 0.56 43.0 4.01e-01 97.2% 64.4%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 33.0 4.10e-01 85.8% 98.4%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 34.0 3.33e-01 100.0% 54.9%
5z6pA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.54 44.0 3.66e-01 100.0% 51.7%
2wliA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.54 38.0 3.36e-01 100.0% 49.1%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 28.0 3.36e-01 80.2% 78.9%
5jgfA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.51 42.0 3.84e-01 91.5% 77.2%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.50 37.0 3.00e-01 96.2% 42.0%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5045949 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.73 41.0 4.19e-01 100.0% 56.2%
1843712 10.32.1.85 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Cbm74 0.72 41.0 4.20e-01 98.1% 57.8%
1871008 11.1.1.237 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 0.69 38.0 3.92e-01 99.1% 54.8%
4970004 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 43.0 4.32e-01 98.1% 61.9%
4374005 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 37.0 3.66e-01 100.0% 49.6%
3260499 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 43.0 4.13e-01 100.0% 57.5%
4949422 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 36.0 3.65e-01 99.1% 51.8%
3214023 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.64 39.0 3.72e-01 100.0% 52.0%
3874464 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.63 40.0 2.74e-01 99.1% 18.6%
3892842 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.62 37.0 4.46e-01 99.1% 95.4%
4983389 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.62 30.0 3.69e-01 73.6% 73.8%
5044391 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 29.0 4.02e-01 73.6% 96.0%
5042583 10.3.1.0 beta sandwiches › jelly-roll › TNF-like › TNF-like 0.60 35.0 3.64e-01 100.0% 61.1%
4990637 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 37.0 4.08e-01 99.1% 78.3%
4443040 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.60 31.0 3.17e-01 81.1% 50.0%
4380962 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 31.0 3.16e-01 81.1% 49.5%
5044389 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.60 29.0 4.03e-01 74.5% 98.0%
3490255 11.1.4.114 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7062 0.59 34.0 3.53e-01 100.0% 59.0%
3382614 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 42.0 2.66e-01 98.1% 14.4%
3411558 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.57 41.0 3.78e-01 100.0% 57.1%
366302 11.1.1.70 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Bile_Hydr_Trans 0.57 44.0 4.03e-01 97.2% 64.0%
3482975 223.2.1.7 a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.54 30.0 2.86e-01 78.3% 43.2%
3228053 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 29.0 3.70e-01 77.4% 100.0%
4426276 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 30.0 3.53e-01 80.2% 82.9%
4085772 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.52 29.0 3.42e-01 81.1% 77.3%
3725498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 31.0 3.71e-01 84.9% 94.3%
3811166 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.50 35.0 2.60e-01 71.7% 95.0%
3987614 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.50 34.0 3.94e-01 79.2% 93.8%