←Back to structures

KT898133.1__ALN97524.1__ARM81ld_p04__00004

Bact-Vir

KT898133.1__ALN97524.1__ARM81ld_p04__00004

Identity

Accession:
KT898133 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aeromonas_phage_phiARM81ld

TaxID: 1748773

Cluster

View cluster (78 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 41-60_147-272
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05136.19 best Phage_portal_2 75.5 6.20e-21 87.0% 31.9%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 30.0 3.91e-01 80.8% 77.1%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 26.0 3.53e-01 82.9% 100.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082725 4056.1.1.9 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 0.80 54.0 6.53e-01 74.0% 100.0%
3977478 4056.1.1.9 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 0.77 52.0 6.30e-01 74.0% 100.0%
1557493 4056.1.1.6 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › P23-45_portal_barrel 0.71 40.0 5.33e-01 75.3% 100.0%
D2 medium residues 61-146_430-448
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05136.19 best Phage_portal_2 54.9 1.20e-14 95.2% 24.3%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w3sB03 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.54 26.0 2.76e-01 75.2% 48.9%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3980619 4038.1.1.7 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal_2 0.97 94.0 6.33e-01 100.0% 76.6%
3980782 4038.1.1.7 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal_2 0.78 74.0 5.01e-01 100.0% 82.4%
5063535 5058.1.1.16 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.58 35.0 3.95e-01 80.0% 78.8%
4497287 5051.1.1.2 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease 0.52 45.0 2.96e-01 100.0% 75.8%
D3 medium residues 274-337
PDB
D4 medium residues 452-510
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g26A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 42.0 2.80e-01 86.4% 38.0%
3gwlA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.56 39.0 3.40e-01 78.0% 98.1%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 3.94e-01 86.4% 59.8%
1jr8A00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.56 41.0 3.45e-01 81.4% 96.2%
1h2tC03 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 41.0 2.76e-01 89.8% 40.5%
1wljA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 41.0 3.03e-01 93.2% 85.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3645005 1076.1.1.2 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Aph-1 0.57 43.0 2.83e-01 81.4% 75.5%
3661592 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.57 42.0 2.84e-01 86.4% 37.8%
3498159 109.4.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G 0.56 46.0 2.66e-01 93.2% 15.5%
4034096 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 4.14e-01 93.2% 87.5%
3590624 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.53 43.0 3.88e-01 94.9% 65.0%
4978144 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.52 37.0 3.70e-01 94.9% 76.7%
3282258 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.50 36.0 3.47e-01 98.3% 64.3%