←Back to structures

KT898134.1__ALN97586.1__ARM81mr_p05__00005

Bact-Vir

KT898134.1__ALN97586.1__ARM81mr_p05__00005

Identity

Accession:
KT898134 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aeromonas_phage_phiARM81mr

TaxID: 1754209

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-75
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dynA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.67 57.0 4.67e-01 100.0% 82.1%
3agkA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.66 55.0 4.27e-01 100.0% 41.9%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 54.0 3.62e-01 100.0% 24.4%
1v6zA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.61 36.0 3.48e-01 76.4% 49.2%
2kdkA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 42.0 3.41e-01 72.7% 43.1%
5zc1D00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 46.0 3.86e-01 94.5% 48.0%
3wuhB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 48.0 3.55e-01 100.0% 34.3%
7sulB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 3.17e-01 100.0% 25.7%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.58 47.0 4.30e-01 90.9% 68.1%
1azoA00 3.40.600.10 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II 0.58 38.0 2.64e-01 100.0% 17.8%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 46.0 2.89e-01 96.4% 19.3%
2iecD00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.56 38.0 3.00e-01 70.9% 33.3%
4zn4A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 2.88e-01 100.0% 18.6%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.55 47.0 3.74e-01 100.0% 70.2%
8es5A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 40.0 3.15e-01 81.8% 97.1%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.55 44.0 4.12e-01 100.0% 93.5%
1c9rA04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.55 42.0 3.58e-01 100.0% 47.7%
4g3vA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 40.0 2.96e-01 81.8% 69.8%
4j0xA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.76e-01 100.0% 21.4%
4oyvA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 42.0 3.18e-01 87.3% 34.8%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.53 40.0 3.73e-01 98.2% 64.0%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.71e-01 98.2% 98.8%
1bf5A04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 41.0 3.41e-01 100.0% 46.0%
3hbxA03 3.90.1150.160 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.52 45.0 3.92e-01 100.0% 94.3%
6g9sA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 41.0 2.62e-01 100.0% 15.4%
1hztA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 44.0 3.29e-01 100.0% 92.8%
3rhtA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.51 45.0 2.94e-01 100.0% 69.4%
3db2B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 43.0 2.96e-01 96.4% 79.8%
2nmbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 2.97e-01 100.0% 33.3%
1vkcA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 39.0 2.94e-01 85.5% 69.1%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4344652 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.67 59.0 4.65e-01 100.0% 86.1%
3613469 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.63 55.0 4.13e-01 100.0% 82.1%
360442 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.62 54.0 3.53e-01 100.0% 29.6%
4093185 223.1.1.5 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HrcA 0.61 49.0 3.53e-01 87.3% 42.6%
3596299 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 52.0 4.31e-01 100.0% 70.5%
3718301 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.61 52.0 4.33e-01 100.0% 55.8%
4987252 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 44.0 3.51e-01 78.2% 70.0%
3712993 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 48.0 4.46e-01 100.0% 72.0%
3712883 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.59 48.0 2.95e-01 94.5% 23.3%
4013195 206.1.3.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP 0.59 39.0 2.84e-01 70.9% 97.6%
3701877 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.58 48.0 2.92e-01 94.5% 22.7%
3210247 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 50.0 3.05e-01 100.0% 17.6%
3583675 5.1.4.321 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30361 0.58 48.0 3.00e-01 96.4% 22.4%
3640540 5.1.4.97 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop 0.58 47.0 2.79e-01 96.4% 17.6%
3503026 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 48.0 3.01e-01 100.0% 21.4%
3917609 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 50.0 3.18e-01 100.0% 24.6%
3770073 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.57 49.0 2.92e-01 96.4% 15.1%
5013366 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 44.0 3.42e-01 83.6% 67.5%
3676745 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.56 44.0 3.53e-01 98.2% 46.4%
4979132 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 46.0 3.58e-01 94.5% 42.2%
3597963 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 3.91e-01 98.2% 58.1%
3713085 206.1.3.12 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL 0.56 48.0 2.90e-01 100.0% 79.3%
3651732 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.56 44.0 2.98e-01 98.2% 24.1%
3868627 5.1.4.308 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, LLGL 0.56 47.0 2.59e-01 96.4% 8.5%
3223329 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 45.0 2.69e-01 96.4% 12.9%
3223921 2484.1.1.259 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26742 0.55 44.0 3.98e-01 100.0% 75.6%
3646079 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.55 42.0 3.36e-01 85.5% 89.2%
3683658 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.55 43.0 2.78e-01 100.0% 18.1%
3658408 4325.1.1.13 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF4371 0.54 44.0 4.11e-01 100.0% 88.0%
3561230 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 39.0 3.60e-01 80.0% 64.0%
3722420 2008.1.1.143 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 0.54 43.0 3.28e-01 100.0% 35.6%
3177726 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 43.0 3.19e-01 100.0% 31.9%
3194506 220.1.1.201 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493 0.53 44.0 3.66e-01 100.0% 50.9%
2084840 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 2.78e-01 100.0% 20.2%
3641990 295.1.1.39 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF4371 0.53 43.0 4.05e-01 100.0% 84.0%
4928046 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 43.0 3.47e-01 96.4% 53.3%
3176791 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.52 44.0 3.57e-01 100.0% 60.0%
3739414 330.1.1.3 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer 0.52 45.0 3.69e-01 98.2% 66.7%
3721305 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.51 38.0 3.05e-01 78.2% 41.7%
5013584 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.51 36.0 3.30e-01 72.7% 81.4%
3599881 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 43.0 3.31e-01 100.0% 44.8%
3676790 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.51 37.0 2.85e-01 81.8% 32.9%
3511004 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 42.0 3.72e-01 100.0% 93.3%
3858621 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 42.0 3.83e-01 98.2% 96.2%
3628253 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.50 40.0 3.15e-01 94.5% 73.3%
D2 medium residues 100-151
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mh3A00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.82 48.0 4.34e-01 82.7% 44.3%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.67 60.0 4.16e-01 100.0% 32.7%
3eofB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.63 55.0 3.54e-01 100.0% 22.0%
D3 medium residues 152-237
PDB
Domain cluster: rep: MW824385.1__QZI87711.1__PODOV021v1_p0036__00036__D1-69