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KT898134.1__ALN97590.1__ARM81mr_p09__00009
Bact-VirKT898134.1__ALN97590.1__ARM81mr_p09__00009
Identity
- Accession:
- KT898134 ↗
- Kingdom:
- phage
Quality
88.7
mean pLDDT
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 170-301
Domain cluster:
rep: LC778250.1__BES53401.1__X__00056__D223-387
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04381.18 best | RdgC | 39.8 | 4.70e-10 | 99.2% | 39.3% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j8bA00 | 3.30.1310.10 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain | 0.61 | 35.0 | 4.12e-01 | 100.0% | 81.5% |
| 2q5wE00 | 3.90.1170.40 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit | 0.56 | 31.0 | 3.14e-01 | 100.0% | 52.6% |
| 1j5yA02 | 3.30.1340.20 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain | 0.56 | 39.0 | 4.22e-01 | 100.0% | 88.8% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 50.0 | 4.65e-01 | 100.0% | 84.6% |
| 2x5gA00 | 3.30.720.60 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.53 | 33.0 | 3.84e-01 | 97.0% | 89.0% |
| 1e3hA03 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.52 | 44.0 | 3.81e-01 | 93.9% | 96.2% |
| 2nn6E00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.51 | 44.0 | 3.53e-01 | 94.7% | 84.0% |
| 2nn6C00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.51 | 44.0 | 3.53e-01 | 94.7% | 84.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4562263 | 3435.1.1.1 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC | 0.86 | 81.0 | 5.95e-01 | 100.0% | 42.4% |
| 4208499 | 3435.1.1.1 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC | 0.86 | 79.0 | 5.80e-01 | 100.0% | 41.4% |
| 3963537 | 3435.1.1.1 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC | 0.86 | 79.0 | 5.84e-01 | 100.0% | 42.1% |
| 331637 | 3435.1.1.1 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC | 0.85 | 78.0 | 5.74e-01 | 100.0% | 41.2% |
| 4886009 | 3435.1.1.1 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC | 0.85 | 78.0 | 5.75e-01 | 100.0% | 42.0% |
| 4997494 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.76 | 58.0 | 4.83e-01 | 100.0% | 47.7% |
| 5038450 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.74 | 65.0 | 5.08e-01 | 100.0% | 45.6% |
| 4964235 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.69 | 54.0 | 4.29e-01 | 100.0% | 41.5% |
| 3283626 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.63 | 32.0 | 4.46e-01 | 96.2% | 100.0% |
| 5078194 | 4294.1.1.2 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p | 0.53 | 37.0 | 4.02e-01 | 92.4% | 86.4% |
| 3476018 | 220.1.1.155 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26658 | 0.51 | 25.0 | 2.63e-01 | 72.0% | 50.4% |
| 4325844 | 5085.1.1.2 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › PF27489, PF29296 | 0.50 | 35.0 | 2.41e-01 | 71.2% | 86.2% |
D2
medium
residues 44-70_122-164
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dpuB03 | 3.30.310.200 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.66 | 58.0 | 5.09e-01 | 100.0% | 68.5% |
| 2p18A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.65 | 58.0 | 3.82e-01 | 100.0% | 30.7% |
| 3zwfA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.64 | 54.0 | 3.70e-01 | 95.7% | 46.3% |
| 1xkiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.61 | 51.0 | 4.30e-01 | 97.1% | 93.8% |
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.61 | 51.0 | 4.65e-01 | 100.0% | 70.2% |
| 6l4lA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.61 | 44.0 | 3.63e-01 | 78.6% | 62.5% |
| 1e8oD00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.60 | 38.0 | 3.75e-01 | 91.4% | 60.5% |
| 2mm0A00 | 2.10.70.110 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.59 | 39.0 | 4.03e-01 | 90.0% | 73.4% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.59 | 46.0 | 4.15e-01 | 92.9% | 60.6% |
| 1hczA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.59 | 41.0 | 4.45e-01 | 94.3% | 88.1% |
| 1euvA02 | 3.30.310.130 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Ubiquitin-related | 0.58 | 49.0 | 4.37e-01 | 97.1% | 93.3% |
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.58 | 43.0 | 4.07e-01 | 81.4% | 78.4% |
| 3thxB02 | 3.30.420.110 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain | 0.58 | 43.0 | 3.45e-01 | 82.9% | 90.8% |
| 4a7kA03 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.57 | 40.0 | 3.13e-01 | 72.9% | 91.8% |
| 3r7wB02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.57 | 40.0 | 3.39e-01 | 74.3% | 55.9% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.57 | 49.0 | 4.77e-01 | 100.0% | 89.7% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.56 | 50.0 | 3.46e-01 | 100.0% | 48.3% |
| 2k49A00 | 2.30.29.80 | Mainly Beta › Roll › PH-domain like › | 0.56 | 44.0 | 3.82e-01 | 90.0% | 86.4% |
| 8adbA01 | 3.90.70.120 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.56 | 42.0 | 3.00e-01 | 80.0% | 59.9% |
| 4bfeC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 38.0 | 3.34e-01 | 82.9% | 47.2% |
| 2h1eA02 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 38.0 | 4.09e-01 | 91.4% | 92.7% |
| 2k4vA00 | 3.30.160.370 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 | 0.55 | 44.0 | 3.68e-01 | 88.6% | 73.6% |
| 3fqmA01 | 2.20.25.210 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B | 0.55 | 39.0 | 4.19e-01 | 75.7% | 88.5% |
| 7vljA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.55 | 38.0 | 3.51e-01 | 72.9% | 61.3% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.55 | 46.0 | 3.26e-01 | 97.1% | 46.8% |
| 3hrgA01 | 3.30.420.250 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain | 0.54 | 38.0 | 3.15e-01 | 75.7% | 78.3% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 38.0 | 3.95e-01 | 90.0% | 81.8% |
| 1z9fA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 43.0 | 3.96e-01 | 88.6% | 85.4% |
| 3io5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 40.0 | 2.74e-01 | 87.1% | 21.8% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.52 | 38.0 | 3.01e-01 | 81.4% | 89.2% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 36.0 | 3.60e-01 | 72.9% | 71.8% |
| 2x5gA00 | 3.30.720.60 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.52 | 42.0 | 4.00e-01 | 100.0% | 100.0% |
| 3nynA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 37.0 | 3.02e-01 | 80.0% | 70.7% |
| 3lxrF00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.51 | 43.0 | 3.26e-01 | 97.1% | 82.9% |
| 2vz6B01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 36.0 | 3.51e-01 | 78.6% | 78.3% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.51 | 36.0 | 3.30e-01 | 77.1% | 97.0% |
| 2acxA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 37.0 | 3.43e-01 | 78.6% | 70.3% |
| 6bfnA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 37.0 | 3.43e-01 | 80.0% | 64.5% |
| 3uiuA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 36.0 | 3.32e-01 | 78.6% | 59.8% |
| 8b4hA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 42.0 | 3.36e-01 | 100.0% | 56.8% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.66 | 55.0 | 3.16e-01 | 92.9% | 27.5% | |
| 4978331 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.63 | 49.0 | 4.91e-01 | 94.3% | 85.7% |
| 4030033 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.61 | 49.0 | 4.83e-01 | 92.9% | 84.0% |
| 3592067 | 243.4.1.0 ↗ | a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like | 0.59 | 48.0 | 3.67e-01 | 94.3% | 60.0% |
| 3719388 | 243.4.1.0 ↗ | a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like | 0.59 | 48.0 | 3.44e-01 | 94.3% | 69.1% |
| 3955489 | 2484.1.1.211 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB | 0.57 | 40.0 | 2.97e-01 | 75.7% | 99.0% |
| 3960877 | 295.1.1.27 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 | 0.57 | 47.0 | 4.70e-01 | 98.6% | 88.6% |
| 3393071 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.55 | 45.0 | 2.80e-01 | 91.4% | 49.8% |
| 4528763 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.55 | 40.0 | 3.23e-01 | 77.1% | 97.1% |
| 3632692 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.55 | 38.0 | 3.92e-01 | 97.1% | 80.0% |
| 4889354 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.54 | 44.0 | 2.79e-01 | 91.4% | 49.4% |
| 5075465 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.54 | 32.0 | 3.42e-01 | 98.6% | 68.3% |
| 3508283 | 5.1.5.156 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_RSE1_1st | 0.54 | 44.0 | 2.76e-01 | 92.9% | 49.4% |
| 5018514 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 47.0 | 3.80e-01 | 98.6% | 76.3% |
| 3782385 | 5.1.4.78 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta | 0.53 | 43.0 | 2.69e-01 | 91.4% | 48.7% |
| 3940247 | 4099.1.1.1 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD | 0.53 | 43.0 | 3.62e-01 | 88.6% | 55.0% |
| 4992194 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.53 | 36.0 | 3.36e-01 | 71.4% | 54.4% |
| 3699899 | 214.1.1.6 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2_2 | 0.53 | 41.0 | 3.52e-01 | 87.1% | 70.0% |
| 4627488 | 5.1.4.156 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 | 0.52 | 44.0 | 2.67e-01 | 90.0% | 87.3% |
| 3597599 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.52 | 40.0 | 3.64e-01 | 87.1% | 84.0% |
| 3514954 | 5.1.4.77 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF3748 | 0.51 | 40.0 | 2.62e-01 | 92.9% | 69.6% |
| 3643555 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.51 | 39.0 | 2.53e-01 | 82.9% | 64.7% |
| 2575628 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.51 | 41.0 | 3.35e-01 | 100.0% | 44.4% |
| 3249490 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.51 | 40.0 | 3.46e-01 | 88.6% | 93.9% |
| 4137634 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 37.0 | 3.35e-01 | 77.1% | 97.9% |
| 3436240 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.50 | 40.0 | 2.70e-01 | 91.4% | 36.5% |
| 3811166 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.50 | 43.0 | 2.90e-01 | 97.1% | 39.3% |
| 3254492 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.50 | 38.0 | 3.16e-01 | 85.7% | 60.1% |