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KT898134.1__ALN97593.1__ARM81mr_p12__00012

Bact-Vir

KT898134.1__ALN97593.1__ARM81mr_p12__00012

Identity

Accession:
KT898134 ↗
Kingdom:
phage

Quality

92.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aeromonas_phage_phiARM81mr

TaxID: 1754209

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-32_93-137
PDB
Domain cluster: representative
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
185721 3397.1.1.1 ↗ a+b complex topology › Tic22 › Tic22 › Tic22 › Tic22 0.68 51.0 4.35e-01 79.7% 90.7%
3235973 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 42.0 4.06e-01 87.8% 83.5%
3970277 376.1.1.134 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › NosL 0.51 36.0 3.66e-01 74.3% 82.7%
D2 high residues 34-87
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.68 47.0 4.23e-01 72.2% 84.8%
3l2pA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.63 52.0 4.00e-01 90.7% 43.3%
2hivA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.63 52.0 3.61e-01 100.0% 62.6%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.62 52.0 4.61e-01 98.1% 98.8%
2gs8A01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.62 44.0 3.06e-01 74.1% 66.5%
2ckaA01 3.40.5.120 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.60 41.0 4.30e-01 72.2% 83.7%
6x4tA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 47.0 4.09e-01 87.0% 71.8%
4n18A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 47.0 3.64e-01 88.9% 86.7%
3hg7A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 47.0 3.64e-01 88.9% 71.2%
4xcvA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 46.0 3.52e-01 87.0% 70.8%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.58 41.0 4.40e-01 75.9% 100.0%
4cujA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 46.0 3.50e-01 88.9% 60.2%
2b9sA02 1.10.10.41 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 0.56 38.0 3.35e-01 70.4% 82.8%
2yq5C01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 43.0 3.32e-01 87.0% 60.2%
1wgrA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 42.0 3.74e-01 90.7% 91.5%
3vk6A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 38.0 3.75e-01 77.8% 79.7%
1jceA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 39.0 2.87e-01 83.3% 45.8%
3oq3B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.28e-01 88.9% 60.0%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.38e-01 90.7% 87.1%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3470449 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.74 51.0 4.52e-01 74.1% 88.7%
3921414 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.71 51.0 4.58e-01 77.8% 89.9%
3912708 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.69 48.0 4.48e-01 74.1% 98.6%
3453009 4357.1.1.6 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.69 47.0 4.09e-01 70.4% 82.4%
3254634 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.68 48.0 4.32e-01 74.1% 93.3%
3643093 206.1.3.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.67 57.0 3.79e-01 100.0% 39.6%
158750 4357.1.1.2 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_1 0.67 47.0 3.93e-01 74.1% 68.7%
908 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.65 49.0 4.38e-01 81.5% 92.5%
3378267 4095.1.1.2 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_M+DNA_ligase_A_N 0.65 54.0 3.24e-01 100.0% 21.1%
3629954 822.2.1.1 ↗ a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK 0.63 44.0 4.75e-01 74.1% 88.9%
3253455 4095.1.1.2 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_M+DNA_ligase_A_N 0.63 54.0 3.19e-01 100.0% 30.4%
4027643 4057.1.1.1 ↗ alpha arrays › Alpha-helical domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment › Alpha-helical domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment › Alpha-helical domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment › Topoisom_I_N 0.61 42.0 3.54e-01 70.4% 88.4%
5049743 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.59 43.0 2.66e-01 81.5% 85.5%
4143941 321.1.1.7 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.58 42.0 2.55e-01 79.6% 78.4%
222312 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 41.0 4.40e-01 75.9% 100.0%
3778889 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.56 44.0 3.36e-01 90.7% 59.3%
4941003 329.1.1.2 ↗ a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › DUF4443 0.56 38.0 3.11e-01 74.1% 35.5%
4225090 2002.1.1.160 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Lact_bio_phlase 0.54 43.0 2.58e-01 88.9% 46.9%
3698302 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 41.0 4.12e-01 83.3% 87.3%
3342669 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.53 36.0 3.63e-01 70.4% 86.8%
5022335 1.1.2.20 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_central 0.53 44.0 2.99e-01 98.1% 75.5%
4488855 275.1.1.5 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › Arc_PepC 0.52 41.0 3.76e-01 100.0% 94.1%
4169550 1056.1.1.1 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.52 41.0 3.16e-01 94.4% 52.4%
3388241 1056.1.1.0 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain 0.51 40.0 2.96e-01 94.4% 52.4%
3364276 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.51 35.0 3.56e-01 77.8% 80.0%
3205036 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.50 39.0 2.58e-01 87.0% 46.5%