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KT898134.1__ALN97630.1__ARM81mr_p49__00049
Bact-VirKT898134.1__ALN97630.1__ARM81mr_p49__00049
Identity
- Accession:
- KT898134 ↗
- Kingdom:
- phage
Quality
77.1
mean pLDDT
Cluster
View cluster (51 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 14-67
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16510.13 best | P22_portal | 30.4 | 2.10e-07 | 90.7% | 7.2% |
D2
medium
residues 68-132_445-538
Domain cluster:
rep: OP381185.1__UXM65445.1__X__00001__D67-174_456-525
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16510.13 best | P22_portal | 46.3 | 3.30e-12 | 62.9% | 15.3% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3te6A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.60 | 37.0 | 4.34e-01 | 75.5% | 87.5% |
| 2cdqA02 | 1.20.120.1320 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain | 0.54 | 30.0 | 3.68e-01 | 83.0% | 85.6% |
| 3kflA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.53 | 33.0 | 3.24e-01 | 88.1% | 54.9% |
| 1fpoC02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.53 | 27.0 | 3.56e-01 | 75.5% | 87.9% |
| 2x1lA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.52 | 33.0 | 3.28e-01 | 87.4% | 58.1% |
| 2id3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 28.0 | 2.94e-01 | 74.8% | 57.0% |
| 3kalB05 | 3.30.1490.50 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain | 0.51 | 19.0 | 2.81e-01 | 71.1% | 79.7% |
| 3p3lA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.50 | 41.0 | 3.01e-01 | 85.5% | 67.2% |
D3
medium
residues 133-177_320-348
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16510.13 best | P22_portal | 36.0 | 4.40e-09 | 63.5% | 8.2% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4akmB00 | 2.40.160.110 | Mainly Beta › Beta Barrel › Porin › | 0.62 | 49.0 | 3.88e-01 | 87.8% | 82.8% |
| 3fgtA01 | 2.10.70.60 | Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 | 0.60 | 35.0 | 4.00e-01 | 86.5% | 78.2% |
| 2n99A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.55 | 35.0 | 3.52e-01 | 89.2% | 63.2% |
| 1ywhC03 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.55 | 36.0 | 3.45e-01 | 93.2% | 56.8% |
| 1mkfA02 | 2.60.40.1340 | Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like | 0.53 | 38.0 | 3.00e-01 | 77.0% | 44.2% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.52 | 35.0 | 3.71e-01 | 85.1% | 86.7% |
| 2qvsB02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 37.0 | 3.12e-01 | 83.8% | 42.7% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 35.0 | 3.54e-01 | 86.5% | 71.1% |
| 8gq6A01 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.51 | 35.0 | 2.39e-01 | 73.0% | 97.3% |
| 1n9pA00 | 2.60.40.1400 | Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 | 0.51 | 42.0 | 3.23e-01 | 98.6% | 82.7% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963566 | 4056.1.1.5 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › P22_portal | 0.99 | 84.0 | 6.36e-01 | 87.8% | 99.3% |
| 3981484 | 4056.1.1.9 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 | 0.65 | 52.0 | 4.75e-01 | 87.8% | 100.0% |
| 5082725 | 4056.1.1.9 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 | 0.65 | 54.0 | 4.85e-01 | 90.5% | 99.0% |
| 4034031 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.59 | 44.0 | 4.67e-01 | 78.4% | 98.5% |
| 2521119 | 5084.1.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › MSP | 0.57 | 42.0 | 3.00e-01 | 79.7% | 81.6% |
| 4031151 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.57 | 47.0 | 4.73e-01 | 89.2% | 98.7% |
| 185647 | 3369.1.1.1 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal | 0.55 | 43.0 | 3.47e-01 | 87.8% | 83.9% |
| 3900025 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.55 | 41.0 | 4.20e-01 | 79.7% | 98.6% |
| 3229138 | 382.1.1.19 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF7622 | 0.53 | 38.0 | 3.34e-01 | 75.7% | 87.0% |
| 2886668 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.53 | 35.0 | 4.16e-01 | 71.6% | 100.0% |
| 3187489 | 1.1.5.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 | 0.52 | 42.0 | 2.93e-01 | 90.5% | 86.2% |
| 3819714 | 11.2.1.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 | 0.51 | 36.0 | 2.93e-01 | 75.7% | 96.1% |
D4
medium
residues 178-319
Domain cluster:
rep: IMGVR_UViG_3300027784_001492-3300027784-Ga0207421_100137049__D190-328
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16510.13 best | P22_portal | 28.9 | 6.30e-07 | 100.0% | 18.1% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3eo5A01 | 2.20.230.10 | Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. | 0.54 | 26.0 | 3.21e-01 | 97.2% | 72.7% |
| 4ec7A00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.53 | 23.0 | 2.59e-01 | 78.9% | 47.2% |
| 3rd4B00 | 2.40.50.660 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 23.0 | 2.87e-01 | 90.8% | 64.6% |
| 3rkgA01 | 2.40.128.330 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 24.0 | 2.93e-01 | 91.5% | 68.1% |