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KT919972.1__ALP47036.1__phiGrn1_0032__00032
Bact-VirKT919972.1__ALP47036.1__phiGrn1_0032__00032
Identity
- Accession:
- KT919972 ↗
- Kingdom:
- phage
Quality
78.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Schizotequatrovirus›
Vibrio_phage_phi-Grn1
TaxID: 1747713
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-69
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03903.19 best | Phage_T4_gp36 | 30.2 | 5.70e-07 | 80.9% | 35.1% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lxuX04 | 2.60.40.3170 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 43.0 | 3.55e-01 | 76.5% | 60.6% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4969646 | 2484.1.1.338 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › baeRF_family10 | 0.63 | 40.0 | 3.22e-01 | 79.4% | 32.6% |
| 3344767 | 241.6.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits | 0.56 | 35.0 | 2.94e-01 | 76.5% | 34.4% |
| 3256943 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 37.0 | 3.40e-01 | 70.6% | 49.5% |
| 3301455 | 2484.1.1.109 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › bVLRF1 | 0.53 | 41.0 | 3.00e-01 | 85.3% | 35.9% |
| 3621431 | 385.1.1.2 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › TGF_beta | 0.53 | 35.0 | 3.13e-01 | 70.6% | 80.0% |
D2
high
residues 182-273
Domain cluster:
rep: MW073017.1__QPB08539.1__X__00060__D1038-1127
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13884.12 best | Peptidase_S74 | 51.7 | 1.10e-13 | 54.4% | 89.7% |
D3
medium
residues 115-181