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KT932418.1__ALM62090.1__qdvp001_098__00098

Bact-Vir

KT932418.1__ALM62090.1__qdvp001_098__00098

Identity

Accession:
KT932418 ↗
Kingdom:
phage

Quality

65.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_qdvp001

TaxID: 1003177

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-66
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1st6A02 1.20.120.810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle 0.89 82.0 5.42e-01 100.0% 27.5%
3pltA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.85 76.0 5.21e-01 100.0% 29.9%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.78 65.0 4.45e-01 96.9% 27.0%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 61.0 5.82e-01 98.5% 76.9%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 59.0 5.25e-01 100.0% 63.3%
5uh5D02 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.70 50.0 3.88e-01 75.4% 50.0%
3iylU02 1.10.287.1520 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 50.0 5.49e-01 92.3% 100.0%
3dxpA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.63 49.0 3.41e-01 89.2% 64.0%
2lpeA01 6.10.140.1120 Special › Helix non-globular › Helix Hairpins › 0.61 49.0 4.73e-01 92.3% 82.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4983663 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.86 71.0 6.43e-01 87.7% 67.9%
4029781 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.84 76.0 6.23e-01 100.0% 56.5%
3201572 4177.1.1.7 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Pil1 0.82 73.0 4.81e-01 100.0% 25.1%
5063260 601.33.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD 0.82 61.0 5.13e-01 83.1% 47.3%
3238365 109.4.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G 0.81 67.0 3.84e-01 93.8% 10.1%
3933048 4992.1.1.12 ↗ extended segments › RelB-like › RelB-like › RelB-like › LIN9_C 0.81 72.0 6.24e-01 100.0% 68.0%
3241030 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.78 69.0 4.42e-01 100.0% 28.6%
3748412 604.1.1.92 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3 0.78 71.0 5.81e-01 100.0% 56.5%
3900975 604.1.1.92 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3 0.78 70.0 5.55e-01 100.0% 50.0%
5084060 3755.3.1.637 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.78 68.0 5.18e-01 100.0% 87.1%
3701006 109.40.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C 0.77 59.0 5.13e-01 84.6% 54.0%
3793885 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.77 65.0 5.09e-01 96.9% 43.4%
3380124 109.4.1.1266 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB 0.76 62.0 3.89e-01 93.8% 16.4%
1877523 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.76 67.0 5.61e-01 100.0% 58.0%
4948915 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.74 64.0 4.50e-01 100.0% 30.1%
3214887 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.73 57.0 6.17e-01 86.2% 100.0%
4682031 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.71 53.0 3.04e-01 78.5% 72.5%
5028214 3457.1.1.1 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 0.70 53.0 3.72e-01 80.0% 46.5%
4348504 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.70 59.0 4.40e-01 98.5% 37.1%
4959086 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.69 58.0 5.57e-01 100.0% 84.0%
4828003 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.68 58.0 4.79e-01 98.5% 86.0%
4000037 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.64 51.0 5.26e-01 92.3% 100.0%
5000698 604.38.1.0 ↗ alpha bundles › Spectrin repeat-like › Legionella effector SdeA 3-helical bundle › Legionella effector SdeA 3-helical bundle 0.63 53.0 4.63e-01 98.5% 61.9%