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KT932418.1__ALM62204.1__qdvp001_212__00212

Bact-Vir

KT932418.1__ALM62204.1__qdvp001_212__00212

Identity

Accession:
KT932418 ↗
Kingdom:
phage

Quality

86.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-129
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00239.27 best Resolvase 35.1 1.80e-08 98.4% 68.5%
CATH (67)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bqqA01 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.76 71.0 6.84e-01 100.0% 94.3%
3bvpB00 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.75 68.0 6.79e-01 95.3% 93.8%
3guvA00 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.72 67.0 6.29e-01 98.4% 87.2%
2mhcA00 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.71 60.0 6.15e-01 92.9% 95.0%
3g13B00 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.70 62.0 6.05e-01 95.3% 92.0%
1yvuA03 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 56.0 5.17e-01 88.2% 69.8%
2haeA01 3.40.50.10380 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Malic enzyme, N-terminal domain 0.67 48.0 4.59e-01 82.7% 63.2%
3h5lA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 57.0 4.64e-01 93.7% 93.1%
2yhaA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 53.0 5.19e-01 88.2% 87.1%
4mptA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 56.0 4.63e-01 96.1% 97.8%
3sp1A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 50.0 3.98e-01 85.0% 78.3%
1dp4A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 55.0 4.65e-01 96.1% 99.5%
2iueA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.63 52.0 4.36e-01 88.2% 95.3%
5g5tA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 51.0 4.76e-01 89.0% 77.0%
6fgcA01 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.62 51.0 4.52e-01 88.2% 77.9%
1peaA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 53.0 4.68e-01 94.5% 99.0%
3lopA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 53.0 4.53e-01 94.5% 97.6%
1xovA01 3.40.630.40 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases 0.62 51.0 4.56e-01 88.2% 96.0%
4kv7A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 54.0 4.56e-01 96.1% 95.8%
4ms4B01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 52.0 4.35e-01 93.7% 96.9%
1qvvA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.60 49.0 4.06e-01 88.2% 97.4%
4iilA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 52.0 5.14e-01 96.1% 98.5%
4ry9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 53.0 4.91e-01 99.2% 88.3%
5hj9A00 3.40.800.10 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain 0.59 53.0 4.00e-01 99.2% 78.5%
5z87B02 3.40.50.1700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain 0.59 52.0 4.26e-01 98.4% 81.0%
3qkwB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.58 48.0 4.37e-01 91.3% 83.3%
1mugA00 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.58 46.0 4.30e-01 87.4% 90.9%
1cvrA02 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 50.0 4.19e-01 98.4% 84.4%
1lbqA02 3.40.50.1400 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 47.0 4.62e-01 91.3% 81.3%
4g3hC00 3.40.800.10 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain 0.57 50.0 3.85e-01 100.0% 42.9%
3sipC00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 49.0 4.67e-01 99.2% 79.6%
3k1yA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.56 49.0 4.35e-01 96.1% 75.8%
3a1iA02 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.56 49.0 3.40e-01 97.6% 81.5%
3eefA00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.56 47.0 4.35e-01 94.5% 94.2%
1yzfA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.56 47.0 4.15e-01 93.7% 75.9%
2c2pA01 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.56 45.0 4.11e-01 87.4% 86.5%
2l69A00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 45.0 4.46e-01 87.4% 89.6%
1pyoC00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 49.0 4.59e-01 100.0% 77.6%
4ncbA05 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 46.0 4.44e-01 91.3% 78.9%
2gk4A00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.55 47.0 3.93e-01 94.5% 79.0%
4joqA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 47.0 4.62e-01 96.1% 93.6%
3m21F00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.55 30.0 3.81e-01 100.0% 97.0%
3dciA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.55 49.0 4.19e-01 100.0% 89.4%
5l3sB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 47.0 4.00e-01 94.5% 80.0%
2cunA01 3.40.50.1260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain 0.54 47.0 4.05e-01 96.1% 91.2%
5ilnA01 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.54 44.0 3.85e-01 89.0% 63.8%
2c83A02 3.40.50.11110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sialyltransferase, C-terminal GT-B Rossman nucleotide-binding domain 0.54 48.0 4.28e-01 96.9% 83.5%
5l3qA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 47.0 4.03e-01 96.9% 80.1%
2lleA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 39.0 3.25e-01 75.6% 81.6%
1h7nA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 39.0 2.88e-01 76.4% 77.6%
1vm6B01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 45.0 4.46e-01 92.9% 94.1%
4ng4B01 3.40.50.1260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain 0.53 45.0 4.11e-01 93.7% 92.0%
4f3yA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 45.0 4.21e-01 92.9% 95.0%
2fssA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 44.0 4.14e-01 91.3% 96.8%
8hi7B01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.53 37.0 2.94e-01 72.4% 90.5%
5t3uB00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.53 45.0 4.47e-01 93.7% 91.7%
1v9wA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 36.0 3.64e-01 87.4% 69.2%
2yv9A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 33.0 3.57e-01 87.4% 75.5%
5temA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 43.0 4.06e-01 93.7% 96.8%
3p24C02 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.51 42.0 3.69e-01 91.3% 69.7%
4mchA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 41.0 3.38e-01 88.2% 91.4%
3lovA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 41.0 3.92e-01 88.2% 94.7%
2i9iA00 3.30.160.180 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain 0.50 41.0 3.48e-01 89.0% 81.0%
4g4sO01 3.40.50.12120 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › POC1 chaperone 0.50 41.0 3.50e-01 85.8% 77.5%
4do7A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.50 40.0 3.14e-01 85.8% 84.5%
3u40D00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.50 41.0 3.37e-01 89.0% 92.1%
3ijpB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 42.0 3.93e-01 92.9% 96.2%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944276 7565.1.1.0 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like 0.82 67.0 5.42e-01 87.4% 48.4%
1031122 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.76 71.0 6.76e-01 100.0% 91.7%
3289730 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.75 70.0 6.86e-01 100.0% 98.5%
4932315 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.75 67.0 6.33e-01 95.3% 84.7%
5011494 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.74 68.0 5.59e-01 98.4% 62.3%
4928582 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.73 66.0 6.44e-01 95.3% 94.1%
5038786 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.72 59.0 6.29e-01 87.4% 99.1%
4998604 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.72 67.0 6.47e-01 100.0% 91.4%
5079267 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.72 63.0 6.29e-01 92.9% 95.4%
134345 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.72 67.0 6.29e-01 98.4% 87.2%
4952034 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.71 65.0 6.27e-01 98.4% 90.7%
10957 7590.1.1.2 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi 0.68 56.0 5.14e-01 88.2% 68.9%
3938842 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.68 57.0 4.56e-01 91.3% 90.0%
3938049 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.66 57.0 4.80e-01 93.7% 100.0%
3211938 7590.1.1.2 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi 0.66 54.0 4.90e-01 88.2% 70.3%
3247500 2006.1.5.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Arginase 0.66 54.0 4.05e-01 88.2% 90.5%
3246567 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.66 57.0 4.77e-01 93.7% 99.5%
3623798 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.66 56.0 4.65e-01 93.7% 97.8%
3925041 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.66 56.0 4.64e-01 93.7% 93.9%
3931359 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.66 58.0 4.48e-01 96.1% 81.5%
3583554 7590.1.1.9 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › PF29016 0.65 54.0 5.10e-01 89.0% 88.0%
3928649 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.64 55.0 4.64e-01 93.7% 98.6%
3219813 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.64 55.0 4.54e-01 93.7% 95.2%
None 0.64 50.0 3.98e-01 84.3% 98.9%
4932766 2006.1.5.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Arginase 0.64 52.0 4.09e-01 87.4% 92.1%
3915318 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.63 54.0 3.85e-01 92.9% 88.1%
3586624 7590.1.1.6 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › ArgoMid 0.63 52.0 4.76e-01 88.2% 70.3%
4541198 7541.1.1.1 a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.63 52.0 4.76e-01 88.2% 84.8%
4950135 7541.1.1.1 a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.63 52.0 4.75e-01 88.2% 81.8%
4930321 7541.1.1.1 a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.63 52.0 4.79e-01 88.2% 83.7%
3290664 2007.1.2.13 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 0.63 56.0 4.74e-01 96.9% 97.1%
3398751 7541.1.1.1 a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.62 51.0 4.61e-01 88.2% 77.7%
4032583 7541.1.1.1 a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.62 51.0 4.65e-01 88.2% 80.0%
4974230 7575.1.1.0 a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.62 54.0 4.28e-01 95.3% 83.5%
4957014 2007.1.2.13 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 0.61 54.0 4.61e-01 96.9% 97.1%
4955618 2007.1.2.13 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 0.61 54.0 4.62e-01 96.9% 97.1%
3896758 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.61 52.0 5.27e-01 93.7% 99.2%
None 0.61 51.0 4.06e-01 90.6% 54.7%
5012330 2498.1.1.35 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M54 0.61 52.0 4.32e-01 93.7% 87.4%
4179809 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.61 49.0 4.70e-01 87.4% 90.7%
3190153 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.61 52.0 4.04e-01 94.5% 82.1%
4600968 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.61 51.0 4.13e-01 90.6% 64.3%
None 0.61 51.0 4.03e-01 90.6% 54.6%
5039626 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.61 47.0 4.63e-01 96.1% 75.7%
4208984 2498.1.1.27 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M43 0.60 50.0 3.96e-01 90.6% 53.7%
4975758 7546.1.1.1 a/b three-layered sandwiches › Glutaminase/Asparaginase N-terminal domain › Glutaminase/Asparaginase N-terminal domain › Glutaminase/Asparaginase N-terminal domain › Asparaginase 0.60 53.0 4.96e-01 99.2% 98.1%
1252761 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.60 52.0 5.23e-01 96.9% 99.2%
5059307 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.59 49.0 3.84e-01 90.6% 45.3%
3225301 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.59 50.0 4.22e-01 93.7% 94.0%
5042960 7539.1.1.1 a/b three-layered sandwiches › Creatininase › Creatininase › Creatininase › Creatininase 0.58 52.0 4.18e-01 100.0% 74.6%
3708970 2007.1.2.28 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_A-cyclase_1 0.58 53.0 4.91e-01 100.0% 93.1%
5058427 2007.1.3.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.58 50.0 4.44e-01 95.3% 85.8%
4945858 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.58 50.0 4.16e-01 94.5% 100.0%
3272131 7579.1.1.71 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DDHD 0.58 51.0 4.15e-01 99.2% 88.8%
4075399 7512.1.1.31 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 0.58 48.0 3.98e-01 91.3% 93.1%
None 0.58 47.0 3.83e-01 90.6% 55.0%
5027936 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.58 46.0 4.70e-01 84.3% 100.0%
4969477 2006.1.5.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Arginase 0.58 52.0 3.96e-01 100.0% 46.0%
4600734 2005.1.1.29 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g 0.57 50.0 3.85e-01 96.9% 99.7%
3679926 7579.1.1.71 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DDHD 0.57 50.0 3.80e-01 99.2% 66.4%
4943357 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.57 48.0 4.11e-01 93.7% 82.6%
4998265 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.57 44.0 4.01e-01 96.9% 60.6%
3061339 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.57 49.0 3.52e-01 96.9% 85.5%
3988321 7561.1.1.1 a/b three-layered sandwiches › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase 0.56 47.0 4.38e-01 92.1% 95.8%
3913003 7575.1.1.1 a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C14 0.56 51.0 4.04e-01 100.0% 59.6%
5003192 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.56 47.0 4.32e-01 92.9% 83.5%
4959831 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.55 44.0 4.38e-01 89.8% 83.1%
5068854 7561.1.1.1 a/b three-layered sandwiches › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase 0.55 46.0 4.06e-01 92.9% 90.0%
2723705 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.54 47.0 4.05e-01 96.1% 81.2%
3647960 7516.1.1.20 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_34 0.54 46.0 4.07e-01 93.7% 97.9%
4982851 2004.1.1.94 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 0.54 45.0 3.67e-01 91.3% 90.2%
4105015 2003.1.1.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DapB_N 0.53 44.0 4.08e-01 92.1% 95.8%
4608197 2003.1.1.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DapB_N 0.53 44.0 4.37e-01 92.9% 94.8%
1907442 2010.1.1.3 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man 0.52 44.0 4.43e-01 93.7% 91.7%
4517679 2003.1.1.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DapB_N 0.52 44.0 3.99e-01 92.1% 90.6%
4561209 7510.1.1.0 a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like 0.51 37.0 3.70e-01 89.0% 71.9%
3741558 4969.1.1.5 alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DUF1744 0.51 41.0 3.77e-01 92.1% 96.8%
3682165 2484.1.1.153 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1744 0.50 41.0 3.78e-01 92.9% 85.0%
3974581 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.50 45.0 3.77e-01 100.0% 81.4%
D2 high residues 186-239
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6k4yI00 1.10.1810.10 Mainly Alpha › Orthogonal Bundle › Anti-sigma factor AsiA › Anti-Sigma Factor A 0.76 65.0 5.62e-01 98.1% 67.0%
3mhsB00 1.10.246.140 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 0.71 49.0 4.06e-01 72.2% 46.2%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 4.91e-01 96.3% 68.8%
4yiiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 57.0 5.30e-01 100.0% 76.4%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.67 46.0 4.33e-01 74.1% 97.1%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 4.64e-01 100.0% 58.1%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 54.0 5.38e-01 100.0% 94.6%
1o4xA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 47.0 4.75e-01 94.4% 81.5%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.63 54.0 4.24e-01 100.0% 73.9%
1e3oC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 47.0 4.91e-01 98.1% 91.7%
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.63 45.0 3.49e-01 75.9% 64.1%
4zpxA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 41.0 3.48e-01 72.2% 45.7%
1l9lA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.59 48.0 4.51e-01 100.0% 91.9%
1w5sA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 4.09e-01 100.0% 57.3%
6xpdA01 1.20.1510.10 Mainly Alpha › Up-down Bundle › Alpha-lytic protease prodomain-like › Cation efflux protein transmembrane domain 0.58 41.0 2.78e-01 74.1% 27.7%
3a1yA00 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 41.0 4.09e-01 96.3% 77.6%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 42.0 3.63e-01 87.0% 63.5%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.55 42.0 4.08e-01 87.0% 100.0%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.55 45.0 4.09e-01 96.3% 79.5%
3v76A03 1.10.8.260 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HI0933 insert domain-like 0.53 42.0 4.15e-01 92.6% 91.8%
2kpqA01 6.10.250.730 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 39.0 3.63e-01 83.3% 79.7%
2gomA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.53 40.0 3.84e-01 100.0% 70.5%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.53 43.0 3.83e-01 88.9% 74.0%
1d5rA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 44.0 3.17e-01 98.1% 62.1%
4ezeB00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.51 43.0 2.80e-01 100.0% 63.0%
6o1wA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 45.0 2.90e-01 100.0% 39.6%
2c61A00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 39.0 2.38e-01 85.2% 10.9%
2iusA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 2.75e-01 96.3% 76.2%
2abkA02 1.10.1670.10 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 0.50 42.0 3.50e-01 96.3% 58.6%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 41.0 3.18e-01 100.0% 37.9%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3391047 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 66.0 6.36e-01 100.0% 81.7%
3943619 101.1.1.258 alpha arrays › HTH › HTH › Three-helical HTH › HTH_62 0.79 68.0 6.78e-01 100.0% 96.4%
3956288 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.79 72.0 5.25e-01 100.0% 51.9%
5060421 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 62.0 6.05e-01 98.1% 80.0%
3504540 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.77 62.0 6.22e-01 100.0% 89.1%
4115814 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.76 67.0 4.77e-01 100.0% 38.1%
3956565 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.76 61.0 5.32e-01 100.0% 57.6%
3290651 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 66.0 4.99e-01 100.0% 43.1%
3282557 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.74 64.0 4.43e-01 98.1% 50.8%
3578362 101.1.1.4 alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.74 60.0 5.41e-01 100.0% 65.3%
3590291 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.74 65.0 4.73e-01 100.0% 48.7%
4008778 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 58.0 5.83e-01 98.1% 85.5%
4103293 101.1.2.62 alpha arrays › HTH › HTH › winged helix domain › Sigma54_DBD 0.72 60.0 5.35e-01 98.1% 63.7%
3226857 101.1.1.4 alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.72 61.0 5.28e-01 100.0% 61.2%
3971509 101.1.2.851 alpha arrays › HTH › HTH › winged helix domain › PF27731 0.72 60.0 5.06e-01 96.3% 55.6%
5044657 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 54.0 5.23e-01 96.3% 75.0%
5030856 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.71 62.0 4.76e-01 100.0% 45.6%
3441839 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.71 59.0 5.38e-01 96.3% 78.4%
3789626 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 60.0 5.65e-01 100.0% 80.0%
3905735 101.1.2.94 alpha arrays › HTH › HTH › winged helix domain › ANAPC2 0.69 59.0 5.18e-01 100.0% 64.7%
3443035 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 60.0 4.85e-01 100.0% 57.1%
3169050 101.1.2.94 alpha arrays › HTH › HTH › winged helix domain › ANAPC2 0.68 58.0 4.97e-01 100.0% 58.1%
3391605 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 58.0 5.45e-01 96.3% 87.7%
3505632 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.67 55.0 4.93e-01 100.0% 65.0%
3876674 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 56.0 4.82e-01 100.0% 60.0%
2639344 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.65 54.0 4.37e-01 100.0% 47.9%
4988614 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.64 52.0 5.00e-01 94.4% 78.1%
3589193 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 51.0 4.90e-01 100.0% 81.5%
3873692 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.63 52.0 5.18e-01 98.1% 100.0%
3608253 633.16.1.0 alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.62 49.0 4.95e-01 90.7% 87.3%
3358626 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 51.0 4.88e-01 96.3% 86.2%
4997092 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.61 43.0 4.03e-01 96.3% 58.6%
5046333 101.21.1.1 alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.61 52.0 4.02e-01 100.0% 43.1%
4974573 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.60 47.0 4.34e-01 96.3% 65.3%
5030155 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 50.0 4.61e-01 100.0% 71.4%
3877844 529.1.1.2 few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP 0.60 50.0 4.27e-01 96.3% 60.0%
3479514 101.1.2.318 alpha arrays › HTH › HTH › winged helix domain › HSD3 0.59 49.0 4.58e-01 98.1% 78.6%
3204109 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 49.0 4.96e-01 98.1% 96.3%
3278254 1134.1.1.12 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › DUF349 0.56 39.0 3.55e-01 72.2% 58.6%
3680415 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.55 46.0 4.24e-01 100.0% 73.3%
3680859 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.55 45.0 4.27e-01 100.0% 77.1%
3929907 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.55 39.0 3.97e-01 77.8% 85.5%
3245544 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 41.0 3.26e-01 90.7% 69.6%