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KU052037.1__ALP46900.1__X__00033

Bact-Vir

KU052037.1__ALP46900.1__X__00033

Identity

Accession:
KU052037 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Escherichia_phage_Rac-SA53

TaxID: 1759531

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-142
PDB
Domain cluster: rep: NC_000935.1__NP_050968.1__APSE-1_07__00007__D27-100
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.96 89.0 8.84e-01 97.9% 92.8%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.90 87.0 7.97e-01 100.0% 88.7%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.83 78.0 7.66e-01 100.0% 93.9%
1gm5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.79 63.0 6.18e-01 100.0% 78.4%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.78 40.0 4.29e-01 90.4% 58.0%
5gqoA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 59.0 5.90e-01 100.0% 85.6%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.72 56.0 5.84e-01 100.0% 90.6%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.71 34.0 3.58e-01 87.2% 50.0%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 36.0 4.09e-01 90.4% 64.8%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 56.0 5.45e-01 100.0% 78.6%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.69 50.0 5.54e-01 100.0% 97.3%
1o7iB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 56.0 5.23e-01 100.0% 73.7%
1fguB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 60.0 5.79e-01 96.8% 87.6%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 35.0 3.92e-01 94.7% 69.3%
4dkaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 51.0 5.33e-01 98.9% 97.7%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.62 38.0 3.39e-01 96.8% 42.0%
3tqmA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.61 38.0 3.93e-01 93.6% 65.6%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 33.0 3.91e-01 100.0% 81.4%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 32.0 3.81e-01 93.6% 79.0%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.59 35.0 3.38e-01 71.3% 51.4%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.58 36.0 3.78e-01 94.7% 67.0%
3go2A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 44.0 4.14e-01 84.0% 92.1%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 47.0 4.23e-01 91.5% 90.6%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 35.0 4.00e-01 91.5% 87.0%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 33.0 4.07e-01 92.6% 98.3%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.55 35.0 4.08e-01 95.7% 95.2%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.55 36.0 3.66e-01 97.9% 66.3%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 42.0 3.55e-01 88.3% 80.5%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 44.0 4.16e-01 91.5% 96.4%
3thxA02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.52 43.0 3.57e-01 89.4% 92.7%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 33.0 3.75e-01 89.4% 85.9%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 42.0 4.10e-01 88.3% 100.0%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 33.0 3.73e-01 72.3% 85.9%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 41.0 3.46e-01 86.2% 86.3%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 32.0 3.51e-01 72.3% 76.9%
2r5vB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 40.0 3.16e-01 85.1% 86.2%
2joxA00 2.60.40.4240 Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill 0.51 36.0 3.51e-01 77.7% 66.0%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2132960 2.2.1.4 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Pertussis_S2S3 0.97 94.0 8.64e-01 100.0% 85.2%
169352 2.2.1.0 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins 0.96 93.0 8.46e-01 100.0% 81.4%
2794152 2.2.1.0 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins 0.95 92.0 8.17e-01 100.0% 82.3%
396 2.2.1.8 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Pertus-S5-tox 0.83 78.0 7.68e-01 100.0% 93.9%
4446654 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.82 56.0 6.32e-01 100.0% 92.9%
3588305 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 61.0 6.29e-01 100.0% 85.4%
4052975 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.77 63.0 5.93e-01 100.0% 73.6%
5035327 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 62.0 6.49e-01 100.0% 94.1%
4955341 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 59.0 5.66e-01 98.9% 74.3%
4943785 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 60.0 5.21e-01 100.0% 57.1%
1140900 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.74 35.0 4.35e-01 92.6% 72.9%
5068809 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 62.0 4.61e-01 100.0% 38.2%
4932452 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 65.0 6.56e-01 100.0% 96.8%
5012544 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 60.0 5.79e-01 98.9% 80.0%
3838219 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 54.0 5.66e-01 97.9% 88.2%
4271190 2.1.1.24 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CcmE 0.71 52.0 4.56e-01 98.9% 52.1%
3540354 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 36.0 4.26e-01 90.4% 70.6%
3961706 4.1.1.161 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4178 0.70 38.0 4.50e-01 88.3% 76.9%
3276150 2.1.1.52 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.68 58.0 4.96e-01 100.0% 58.0%
5030516 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.68 59.0 5.68e-01 100.0% 83.8%
3960657 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 47.0 5.18e-01 93.6% 90.7%
5024203 330.10.1.0 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.67 39.0 3.98e-01 92.6% 60.0%
4318011 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.66 45.0 4.12e-01 71.3% 86.4%
3713587 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 53.0 5.23e-01 97.9% 82.0%
5021953 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.65 45.0 4.22e-01 71.3% 91.3%
5056966 264.2.1.1 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.65 45.0 4.14e-01 71.3% 83.3%
3536447 4026.1.1.1 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.65 41.0 3.57e-01 96.8% 41.4%
4210460 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.64 44.0 4.09e-01 71.3% 87.5%
3279407 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 50.0 4.82e-01 98.9% 72.7%
4943166 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.64 49.0 5.24e-01 96.8% 97.5%
5043498 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.63 57.0 3.67e-01 96.8% 37.2%
3590914 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.63 44.0 4.16e-01 71.3% 90.0%
4606349 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 51.0 5.11e-01 100.0% 88.4%
4941364 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.59 36.0 3.48e-01 71.3% 54.3%
3373320 330.1.1.5 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.58 36.0 4.15e-01 93.6% 85.7%
3435911 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 35.0 3.39e-01 96.8% 54.5%
3304346 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 35.0 3.97e-01 93.6% 85.7%
3238323 3535.1.1.0 ↗ a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 0.55 41.0 3.82e-01 91.5% 61.7%
3436093 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 37.0 4.07e-01 94.7% 85.3%
4961746 304.8.1.122 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DmsR_N 0.55 37.0 3.53e-01 97.9% 57.4%
3602244 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 40.0 3.46e-01 89.4% 50.0%
3468063 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.54 47.0 3.14e-01 91.5% 34.8%
3655368 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 36.0 3.99e-01 97.9% 85.3%
4026008 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 37.0 3.91e-01 97.9% 77.6%
3314422 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 35.0 3.90e-01 70.2% 87.1%
3802643 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 37.0 3.78e-01 97.9% 71.6%
3809302 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 36.0 3.84e-01 95.7% 77.6%
3687908 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.53 39.0 3.69e-01 84.0% 65.5%
3267290 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.52 42.0 2.87e-01 87.2% 25.7%
3670595 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 36.0 3.67e-01 95.7% 71.6%
4649416 330.6.1.0 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.51 39.0 4.09e-01 93.6% 87.1%
3519032 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 37.0 3.65e-01 97.9% 72.0%
3165921 881.4.1.1 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › MucB_RseB_C 0.50 43.0 4.32e-01 95.7% 90.5%