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KU052037.1__ALP46904.1__X__00024

Bact-Vir

KU052037.1__ALP46904.1__X__00024

Identity

Accession:
KU052037 ↗
Kingdom:
phage

Quality

88.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 95-229
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03400.19 best DDE_Tnp_IS1 249.6 1.00e-74 94.8% 98.5%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bcoA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.79 72.0 5.97e-01 96.3% 81.1%
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.79 72.0 6.75e-01 97.0% 89.5%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.79 70.0 6.76e-01 93.3% 88.6%
5cz2C00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.76 68.0 6.56e-01 96.3% 84.2%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.72 56.0 4.62e-01 82.2% 84.3%
4o8uA00 3.30.420.440 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 0.67 52.0 4.40e-01 82.2% 100.0%
1bqnA05 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 49.0 5.03e-01 78.5% 93.1%
4e19A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 47.0 4.80e-01 76.3% 100.0%
6oziB00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.63 50.0 4.18e-01 84.4% 88.0%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.63 52.0 4.31e-01 88.9% 87.0%
2w35A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.61 52.0 4.33e-01 89.6% 84.3%
3gocA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.61 51.0 4.23e-01 88.9% 83.8%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.59 26.0 3.52e-01 91.1% 81.5%
3ro6C01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 32.0 3.48e-01 93.3% 65.1%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.57 27.0 3.54e-01 94.1% 87.5%
5m1pB00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.56 49.0 4.37e-01 94.1% 79.9%
4ifeA02 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.56 49.0 4.17e-01 96.3% 87.7%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.56 26.0 3.55e-01 94.1% 96.5%
1sz2B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 39.0 4.12e-01 72.6% 85.8%
3aimA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 41.0 3.25e-01 77.8% 84.1%
2wbnA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.54 46.0 4.26e-01 94.1% 84.3%
2o8bB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.53 46.0 4.16e-01 94.8% 92.5%
3thxA02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.52 45.0 4.20e-01 94.8% 92.1%
5h3hB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 3.44e-01 91.1% 70.3%
3zyyX04 3.30.420.480 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Domain of unknown function (DUF4445) 0.51 43.0 3.84e-01 89.6% 88.3%
4o1jA00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.51 36.0 3.23e-01 74.1% 79.7%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3983782 2484.1.1.119 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.98 67.0 8.18e-01 70.4% 100.0%
3943042 2484.1.1.119 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.96 93.0 9.21e-01 100.0% 97.9%
5079440 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.86 78.0 6.73e-01 100.0% 65.1%
3602926 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.86 83.0 8.08e-01 100.0% 95.1%
3519322 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.86 80.0 6.86e-01 96.3% 72.8%
4933551 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.86 82.0 7.89e-01 100.0% 90.5%
3985723 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.86 79.0 6.71e-01 96.3% 68.3%
4008012 2484.1.1.202 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_2 0.86 79.0 6.98e-01 96.3% 75.7%
3982837 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.86 79.0 7.31e-01 96.3% 84.8%
4952725 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.85 75.0 7.52e-01 100.0% 91.1%
3952641 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.85 79.0 6.80e-01 96.3% 72.8%
5027953 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.85 82.0 7.20e-01 100.0% 80.5%
5028784 2484.1.1.117 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve_3 0.85 81.0 6.51e-01 100.0% 64.6%
3986284 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.85 78.0 6.78e-01 96.3% 70.8%
4957414 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.85 78.0 6.89e-01 96.3% 76.2%
5030453 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.84 81.0 6.50e-01 100.0% 60.0%
3976146 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.84 80.0 6.22e-01 100.0% 97.0%
5027917 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.84 80.0 6.40e-01 100.0% 60.0%
3969957 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.83 77.0 6.71e-01 96.3% 72.6%
3961927 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.83 77.0 7.17e-01 96.3% 88.7%
3988130 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.83 65.0 6.73e-01 80.0% 96.8%
4929499 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.83 79.0 7.36e-01 100.0% 86.9%
5060129 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.83 76.0 6.78e-01 96.3% 81.1%
5052885 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.83 79.0 6.42e-01 100.0% 99.1%
3980339 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.82 77.0 5.91e-01 100.0% 83.5%
4952913 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.82 78.0 6.93e-01 100.0% 88.3%
4952496 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.81 77.0 7.34e-01 100.0% 98.7%
4122250 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.81 77.0 5.93e-01 100.0% 79.6%
4009433 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 76.0 5.42e-01 100.0% 66.8%
4248295 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 76.0 5.51e-01 100.0% 70.7%
4952348 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.80 75.0 6.55e-01 98.5% 93.3%
4943224 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.80 76.0 6.95e-01 100.0% 82.9%
4944877 2484.1.1.117 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve_3 0.80 76.0 7.02e-01 100.0% 85.5%
3424158 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.80 74.0 5.93e-01 96.3% 58.7%
5019289 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.80 64.0 5.43e-01 82.2% 100.0%
5059876 2484.1.1.117 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve_3 0.80 73.0 6.61e-01 96.3% 82.9%
4928281 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.80 76.0 6.14e-01 100.0% 60.9%
3927798 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.80 73.0 6.06e-01 96.3% 64.1%
4927805 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.80 75.0 6.99e-01 98.5% 86.3%
3953103 2484.1.1.102 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.79 71.0 6.84e-01 100.0% 85.9%
5052211 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.79 68.0 6.60e-01 91.9% 97.3%
428031 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.79 71.0 7.13e-01 95.6% 98.5%
3927388 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.77 73.0 6.77e-01 100.0% 89.1%
3531857 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.77 70.0 6.36e-01 96.3% 79.4%
3933413 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.76 69.0 6.28e-01 96.3% 79.4%
5017705 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.76 68.0 5.14e-01 94.8% 69.0%
3573772 2484.1.1.222 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UPF0236 0.75 68.0 6.28e-01 96.3% 95.9%
5078933 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.69 51.0 4.37e-01 76.3% 86.2%
4944954 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.69 51.0 4.32e-01 76.3% 87.4%
3269610 2484.1.1.26 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.68 60.0 4.75e-01 95.6% 95.9%
3592232 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 55.0 4.28e-01 85.9% 79.6%
4152191 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.66 57.0 4.69e-01 94.1% 89.8%
5049460 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.66 54.0 4.37e-01 86.7% 82.9%
5077971 2484.1.1.144 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.63 44.0 4.69e-01 72.6% 82.6%
5044528 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.61 52.0 4.41e-01 89.6% 87.1%
3181651 244.2.1.7 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rubredoxin_C 0.60 30.0 3.54e-01 100.0% 67.4%
3958207 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 48.0 4.83e-01 85.9% 100.0%
5070100 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.59 48.0 4.08e-01 86.7% 85.5%
5083931 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.59 51.0 4.68e-01 94.1% 85.1%
4416209 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.59 52.0 4.28e-01 95.6% 82.1%
4124957 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.58 51.0 4.35e-01 95.6% 89.5%
3390600 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.57 32.0 4.05e-01 83.7% 98.7%
4975081 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 48.0 4.64e-01 94.1% 93.5%
4929631 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 47.0 4.34e-01 94.1% 78.9%
3495092 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 47.0 3.83e-01 93.3% 79.2%
3622747 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 46.0 4.31e-01 95.6% 95.8%
3660202 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.52 46.0 4.08e-01 97.0% 92.3%
3584051 2484.1.1.205 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 0.52 45.0 4.18e-01 95.6% 96.0%
4488030 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.52 44.0 4.39e-01 96.3% 87.6%
4632327 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.51 45.0 4.41e-01 96.3% 87.6%
4171807 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.51 45.0 4.31e-01 97.0% 81.9%
4307499 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.51 44.0 4.33e-01 96.3% 88.3%
4256383 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.50 44.0 4.33e-01 97.0% 92.0%
D2 medium residues 45-85
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12759.13 best HTH_Tnp_IS1 88.8 1.90e-25 100.0% 87.0%