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KU064779.1__ALO79962.1__PPPL1_002__00002

Bact-Vir

KU064779.1__ALO79962.1__PPPL1_002__00002

Identity

Accession:
KU064779 ↗
Kingdom:
phage

Quality

92.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Hennigervirus› Pseudomonas_phage_PPPL-1

TaxID: 1755692

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-85
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.72 52.0 4.77e-01 74.7% 86.7%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 42.0 3.69e-01 88.0% 44.3%
2va0A00 3.30.450.160 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 34.0 3.24e-01 71.1% 45.5%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 46.0 4.46e-01 91.6% 73.9%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 36.0 4.05e-01 83.1% 81.0%
7ct3A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.57 43.0 3.91e-01 83.1% 58.1%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.57 41.0 3.38e-01 78.3% 95.0%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 41.0 3.18e-01 78.3% 94.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 36.0 3.85e-01 88.0% 75.3%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 42.0 3.63e-01 80.7% 86.5%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 45.0 3.11e-01 90.4% 87.5%
2vifA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 47.0 4.10e-01 95.2% 88.9%
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 45.0 4.12e-01 91.6% 88.5%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.71e-01 85.5% 41.3%
1rieA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.54 46.0 3.95e-01 91.6% 96.9%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 35.0 3.90e-01 81.9% 88.7%
2izvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 46.0 3.68e-01 95.2% 57.7%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.53 41.0 3.44e-01 84.3% 48.6%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 47.0 4.00e-01 98.8% 80.0%
6j7xC01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.52 40.0 3.39e-01 81.9% 72.1%
3lidA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 31.0 3.06e-01 100.0% 50.0%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 47.0 3.67e-01 100.0% 49.7%
7szeB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 44.0 4.03e-01 91.6% 100.0%
1vqzA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.52 35.0 3.53e-01 71.1% 87.5%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.66e-01 89.2% 68.2%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.51 35.0 3.46e-01 80.7% 65.6%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.51 40.0 3.51e-01 83.1% 57.5%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.51 42.0 3.42e-01 94.0% 91.8%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.51 33.0 3.70e-01 77.1% 90.0%
2rb7A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.50 42.0 3.06e-01 95.2% 100.0%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.50 43.0 3.82e-01 95.2% 82.4%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3956352 881.1.1.15 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.69 52.0 4.36e-01 79.5% 59.3%
4986643 2484.1.1.148 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_5 0.64 50.0 3.33e-01 84.3% 24.3%
5052577 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 48.0 4.14e-01 81.9% 54.6%
4952518 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.62 43.0 3.95e-01 72.3% 60.9%
2068913 304.107.1.1 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.62 39.0 3.32e-01 94.0% 38.4%
3591940 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.61 46.0 3.56e-01 80.7% 35.8%
4263841 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.61 46.0 3.86e-01 81.9% 45.3%
3730755 286.1.1.3 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PrpF 0.61 41.0 3.18e-01 71.1% 55.5%
3617111 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 39.0 3.85e-01 86.7% 61.1%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.60 37.0 3.99e-01 83.1% 72.9%
3425789 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.60 43.0 2.91e-01 75.9% 44.7%
3875218 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.60 36.0 4.00e-01 81.9% 76.9%
4976643 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.59 44.0 3.92e-01 80.7% 61.6%
3215570 223.2.1.12 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.59 45.0 4.02e-01 81.9% 57.5%
3925092 5.1.11.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › RMC1_N 0.59 41.0 2.69e-01 73.5% 49.2%
3881117 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 40.0 3.80e-01 88.0% 59.0%
4464657 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 39.0 4.06e-01 81.9% 71.2%
3901590 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 41.0 3.91e-01 74.7% 99.0%
3294392 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.58 36.0 3.64e-01 80.7% 61.2%
3330943 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.58 36.0 4.25e-01 80.7% 94.5%
5048375 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.58 44.0 3.84e-01 80.7% 63.2%
2429397 214.1.1.4 ↗ a+b two layers › SH2 › SH2 › SH2 › MelC1 0.58 44.0 4.53e-01 100.0% 86.3%
5083496 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 43.0 3.83e-01 80.7% 58.4%
5078587 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.58 43.0 3.77e-01 80.7% 56.2%
3547106 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 39.0 3.89e-01 88.0% 65.6%
5052689 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.58 44.0 3.85e-01 81.9% 59.2%
3228278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 36.0 4.03e-01 86.7% 83.1%
5050074 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.57 42.0 3.67e-01 80.7% 56.3%
5072402 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.57 43.0 3.79e-01 81.9% 60.0%
5048237 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.57 42.0 3.78e-01 80.7% 59.7%
876 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.57 42.0 3.36e-01 78.3% 92.1%
3470260 223.2.1.12 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.56 43.0 3.70e-01 81.9% 57.0%
5052872 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 42.0 3.73e-01 81.9% 57.4%
3782385 5.1.4.78 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.56 44.0 2.73e-01 83.1% 73.6%
5078870 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 41.0 3.56e-01 80.7% 52.9%
3714409 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 42.0 3.49e-01 81.9% 59.3%
3199259 4.1.1.286 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7072 0.55 36.0 3.92e-01 83.1% 84.6%
4979978 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 42.0 3.69e-01 81.9% 62.4%
4227809 3304.1.1.2 ↗ a+b two layers › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › SUS_N 0.55 39.0 3.35e-01 73.5% 83.0%
5049357 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 42.0 3.85e-01 81.9% 63.6%
4213802 3304.1.1.2 ↗ a+b two layers › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › SUS_N 0.55 44.0 3.74e-01 89.2% 64.3%
4176400 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 38.0 3.95e-01 81.9% 80.0%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 4.10e-01 86.7% 92.3%
3546286 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 46.0 4.04e-01 95.2% 80.0%
3335974 3304.1.1.2 ↗ a+b two layers › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › SUS_N 0.53 42.0 3.64e-01 89.2% 66.4%
3275404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 36.0 4.17e-01 95.2% 98.3%
4678702 3304.1.1.2 ↗ a+b two layers › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › SUS_N 0.53 42.0 3.75e-01 89.2% 65.6%
4069988 3304.1.1.2 ↗ a+b two layers › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › SUS_N 0.53 42.0 3.72e-01 89.2% 64.0%
1563689 3304.1.1.2 ↗ a+b two layers › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › SUS_N 0.52 41.0 3.65e-01 89.2% 67.7%
3937472 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 43.0 4.01e-01 94.0% 87.6%
350146 223.1.1.39 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › AbfS_sensor 0.52 35.0 3.11e-01 74.7% 49.1%
4999447 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.52 44.0 3.08e-01 96.4% 45.7%
3707019 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 40.0 2.63e-01 84.3% 74.1%
4026900 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.51 38.0 3.40e-01 79.5% 75.7%
4962256 101.1.2.937 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25943 0.51 40.0 3.71e-01 88.0% 70.0%