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KU160494.1__ALY07032.1__VmeM32_00041__00036

Bact-Vir

KU160494.1__ALY07032.1__VmeM32_00041__00036

Identity

Accession:
KU160494 ↗
Kingdom:
phage

Quality

59.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Vibrio_phage_vB_VmeM-32

TaxID: 1775142

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 38-172
PDB
D2 medium residues 192-267
PDB
D3 medium residues 268-332_497-522
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.60 33.0 3.95e-01 86.8% 83.9%
2w5fB01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 53.0 4.39e-01 98.9% 97.4%
7zkpA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.55 48.0 3.80e-01 95.6% 100.0%
7k7jA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 45.0 3.70e-01 96.7% 100.0%
3pfeA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 42.0 3.04e-01 92.3% 88.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4186200 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.65 60.0 4.75e-01 98.9% 93.1%
3705718 9.1.1.46 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_5 0.55 44.0 3.75e-01 87.9% 78.7%
3290224 222.1.1.5 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FabA 0.52 40.0 3.31e-01 84.6% 93.1%
5039710 2011.1.1.6 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.51 41.0 3.07e-01 93.4% 90.6%
5018234 223.1.1.6 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.51 39.0 2.81e-01 83.5% 75.2%
D4 medium residues 333-496
PDB
Domain cluster: rep: IMGVR_UViG_3300031776_000022-3300031776-Ga0308415_10004864__D80-237
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21294.5 best Polysacc_lyase_14 55.9 6.90e-15 98.8% 72.6%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6kcvA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.84 80.0 6.92e-01 100.0% 68.8%
3gneB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.84 80.0 6.87e-01 100.0% 72.3%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.78 58.0 6.25e-01 97.6% 89.9%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.75 54.0 5.88e-01 97.0% 87.8%
5nslA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.74 58.0 5.47e-01 100.0% 68.9%
2zzjA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.72 66.0 5.76e-01 100.0% 66.8%
8a7dC01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 60.0 5.47e-01 100.0% 69.0%
2a6vB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 62.0 5.65e-01 100.0% 71.9%
3w9aA00 2.60.120.1160 Mainly Beta › Sandwich › Jelly Rolls › 0.70 57.0 5.01e-01 100.0% 59.5%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 55.0 5.37e-01 100.0% 75.8%
3dgtA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.69 63.0 5.28e-01 100.0% 71.6%
4c1wA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 59.0 5.62e-01 100.0% 79.8%
4qhzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.66 57.0 5.03e-01 100.0% 63.8%
1ux6A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 62.0 5.64e-01 100.0% 86.1%
2sliA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 57.0 5.33e-01 100.0% 77.0%
2r1bA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 55.0 5.11e-01 100.0% 73.2%
4awdB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 61.0 4.94e-01 100.0% 69.9%
3juuA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 59.0 4.96e-01 100.0% 69.8%
1jz7A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 29.0 3.56e-01 98.2% 74.5%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.56 26.0 3.41e-01 92.7% 77.7%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 39.0 4.41e-01 88.4% 98.4%
6nu7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 43.0 3.39e-01 86.0% 94.6%
1f3lA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.52 38.0 3.77e-01 86.6% 72.4%
5fubA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.51 40.0 3.85e-01 87.2% 72.2%
2ownA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 43.0 3.72e-01 91.5% 68.8%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2326343 10.1.1.47 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Polysacc_lyase_14 0.85 82.0 6.74e-01 100.0% 68.2%
2325788 10.1.1.47 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Polysacc_lyase_14 0.84 80.0 6.86e-01 100.0% 72.0%
5012226 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.74 59.0 5.59e-01 100.0% 71.6%
3704753 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.74 69.0 6.02e-01 100.0% 69.6%
3928614 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.73 48.0 4.83e-01 84.1% 65.5%
3914972 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.72 60.0 5.72e-01 100.0% 76.2%
4929324 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.72 68.0 5.62e-01 100.0% 71.9%
4012640 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.72 58.0 4.93e-01 100.0% 54.4%
3261868 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.72 54.0 5.25e-01 99.4% 71.1%
3889733 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.70 53.0 5.05e-01 100.0% 67.9%
3726566 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.69 61.0 4.94e-01 100.0% 51.3%
3389939 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.69 53.0 5.20e-01 100.0% 73.3%
5011693 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.69 64.0 5.88e-01 99.4% 93.7%
4884107 10.1.1.44 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH131_N 0.68 62.0 5.23e-01 100.0% 60.6%
3394892 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.68 64.0 5.81e-01 100.0% 79.0%
3953637 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.68 57.0 5.40e-01 98.2% 76.3%
3962291 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.67 56.0 5.65e-01 98.2% 87.8%
3662606 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.67 59.0 5.29e-01 100.0% 69.5%
3992573 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.67 61.0 5.39e-01 99.4% 70.2%
3918435 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.66 62.0 5.12e-01 100.0% 60.7%
5043798 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.66 58.0 5.54e-01 100.0% 81.6%
3819854 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.66 61.0 5.52e-01 99.4% 75.8%
4072360 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.65 60.0 5.31e-01 100.0% 75.2%
3998600 5.1.2.46 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Beta-prop_IFT140_1st 0.64 36.0 3.84e-01 87.2% 61.1%
3586799 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.64 56.0 5.11e-01 100.0% 71.6%
3485600 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.62 57.0 5.07e-01 100.0% 76.2%
5015217 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 30.0 3.60e-01 90.9% 67.3%
3450833 10.1.1.58 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin 0.60 51.0 5.36e-01 97.6% 100.0%
3182875 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.57 42.0 4.05e-01 89.0% 67.6%
4044884 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.56 41.0 4.01e-01 89.0% 67.6%
5037961 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 31.0 3.73e-01 100.0% 82.9%
5052006 5.1.4.663 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SBBP 0.54 41.0 3.02e-01 78.7% 78.1%
3238967 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 43.0 4.34e-01 98.8% 83.6%
3259637 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.53 41.0 4.06e-01 90.9% 75.4%
5060768 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 30.0 3.62e-01 100.0% 85.7%
3282454 222.1.1.24 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › AfsA 0.52 40.0 4.20e-01 89.0% 89.7%
4220408 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.52 41.0 3.94e-01 87.2% 72.1%
3972254 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.52 44.0 4.60e-01 95.1% 100.0%
3668824 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.51 39.0 2.88e-01 78.7% 80.1%
5030606 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 32.0 3.75e-01 89.6% 92.7%
4958415 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.51 30.0 3.57e-01 98.2% 87.3%