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KU160494.1__ALY07110.1__VmeM32_00123__00114

Bact-Vir

KU160494.1__ALY07110.1__VmeM32_00123__00114

Identity

Accession:
KU160494 ↗
Kingdom:
phage

Quality

73.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Vibrio_phage_vB_VmeM-32

TaxID: 1775142

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-154
PDB
Domain cluster: rep: BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00169__D1-120
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19835.7 best SegE_GIY-YIG 104.0 8.90e-30 78.3% 89.4%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.68 45.0 5.35e-01 78.3% 100.0%
3liuA01 2.60.40.3160 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 33.0 3.60e-01 94.2% 60.2%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 30.0 3.45e-01 92.0% 65.7%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 33.0 4.14e-01 82.6% 97.4%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 32.0 3.15e-01 92.0% 47.7%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 31.0 3.62e-01 87.0% 76.0%
4hsaF02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.55 29.0 3.31e-01 92.0% 66.7%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 31.0 3.92e-01 81.2% 100.0%
1qlbA04 3.10.20.820 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 22.0 2.63e-01 85.5% 51.1%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 24.0 2.84e-01 77.5% 61.5%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 31.0 3.67e-01 87.7% 86.7%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 33.0 3.22e-01 97.8% 56.5%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3666940 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.77 44.0 4.68e-01 77.5% 64.2%
5067865 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.61 32.0 4.26e-01 81.9% 98.6%
4996552 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 33.0 4.08e-01 82.6% 87.1%
5030993 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.58 33.0 4.07e-01 83.3% 93.8%
2527501 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.58 33.0 3.73e-01 82.6% 73.1%
3345090 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.57 33.0 3.69e-01 83.3% 71.3%
5074648 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.56 32.0 4.04e-01 83.3% 100.0%
4013514 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.56 31.0 3.44e-01 80.4% 67.6%
5044011 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 25.0 3.26e-01 92.0% 81.3%
4233298 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 35.0 3.27e-01 98.6% 55.3%
4331814 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.51 28.0 3.02e-01 87.0% 60.9%
184690 11.22.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Dispersin › Dispersin › CellEnv_BiogenAssoc 0.51 31.0 3.67e-01 87.7% 86.7%
3274047 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.50 33.0 3.78e-01 92.0% 90.0%
D2 medium residues 168-226
PDB
D3 medium residues 227-283
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 48.0 3.64e-01 98.2% 45.9%
3fysA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 45.0 3.49e-01 100.0% 66.7%
4x9xA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 44.0 3.43e-01 100.0% 46.3%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 38.0 3.27e-01 77.2% 46.3%
5jtwA03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 3.02e-01 78.9% 79.5%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 36.0 3.36e-01 77.2% 83.5%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 40.0 3.43e-01 91.2% 97.1%
5is2A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 36.0 3.18e-01 77.2% 94.5%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
908 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.61 47.0 4.30e-01 87.7% 96.2%
3503544 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 41.0 3.35e-01 75.4% 39.1%
2895924 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.57 47.0 3.11e-01 100.0% 31.2%
3738248 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.57 38.0 3.53e-01 70.2% 53.3%
3854758 4357.1.1.5 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 0.57 38.0 3.68e-01 70.2% 90.8%
3912708 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.55 38.0 3.67e-01 73.7% 97.1%
4980670 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 36.0 2.90e-01 70.2% 90.0%
4105184 221.1.4.3 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Nqo1 middle domain-like › SLBB_2 0.53 36.0 3.11e-01 73.7% 46.0%
11443 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.53 39.0 3.03e-01 86.0% 49.7%
3581478 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 42.0 4.21e-01 98.2% 95.0%
3985028 213.1.1.103 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Mom 0.52 44.0 3.04e-01 100.0% 28.4%
3788518 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 37.0 3.24e-01 86.0% 81.9%
3736457 376.1.1.96 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ_ADA2 0.50 35.0 3.23e-01 73.7% 56.0%