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KU160494.1__ALY07111.1__VmeM32_00124__00115

Bact-Vir

KU160494.1__ALY07111.1__VmeM32_00124__00115

Identity

Accession:
KU160494 ↗
Kingdom:
phage

Quality

80.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Vibrio_phage_vB_VmeM-32

TaxID: 1775142

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-161
PDB
Domain cluster: rep: MT028491.1__QIG66049.1__phiOC_p407__00383__D25-155
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23474.2 best Acb1 55.2 9.40e-15 99.1% 75.2%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h7wA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.77 70.0 5.92e-01 99.1% 77.0%
1iuhA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.77 71.0 5.99e-01 100.0% 72.7%
1jh6A00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.75 69.0 5.88e-01 100.0% 79.0%
1vdxA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.73 67.0 5.71e-01 100.0% 82.1%
2d4gA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.72 65.0 5.76e-01 100.0% 83.2%
2vfkA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.70 63.0 5.22e-01 100.0% 81.0%
2fsqA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.66 59.0 4.74e-01 100.0% 70.3%
1wojA00 3.90.1740.10 Alpha Beta › Alpha-Beta Complex › 2',3'-cyclic nucleotide 3'-phosphodiesterase fold › 2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily 0.64 58.0 4.72e-01 99.1% 75.1%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 33.0 2.63e-01 90.4% 29.6%
1n08A00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.52 37.0 3.44e-01 74.8% 72.1%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 32.0 2.59e-01 90.4% 29.8%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 31.0 3.39e-01 77.4% 71.9%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937535 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.78 72.0 6.21e-01 100.0% 75.4%
277 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.77 71.0 5.99e-01 100.0% 72.7%
5039548 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.77 70.0 6.03e-01 100.0% 78.2%
4972305 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.76 70.0 6.03e-01 100.0% 71.9%
4972958 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.76 70.0 5.95e-01 100.0% 72.8%
276 264.1.1.4 ↗ beta barrels › LigT-like › LigT-related › LigT-related › CPDase 0.75 69.0 5.88e-01 100.0% 79.0%
5063905 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.75 69.0 6.01e-01 100.0% 77.5%
None — 0.75 69.0 5.83e-01 100.0% 73.4%
5029239 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.75 69.0 5.89e-01 100.0% 72.5%
5047137 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.74 69.0 5.80e-01 100.0% 72.4%
5062926 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.74 68.0 6.01e-01 100.0% 75.2%
3338135 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.74 68.0 5.83e-01 100.0% 78.3%
None — 0.73 67.0 5.71e-01 100.0% 82.1%
1869530 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.73 67.0 5.45e-01 100.0% 78.7%
None — 0.73 67.0 5.75e-01 100.0% 81.7%
4968059 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.73 66.0 5.69e-01 100.0% 81.1%
3738455 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.73 66.0 5.53e-01 100.0% 76.4%
4991838 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.72 66.0 6.32e-01 99.1% 91.0%
4046553 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.72 65.0 5.73e-01 100.0% 82.4%
5028063 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.71 66.0 5.67e-01 100.0% 77.7%
None — 0.71 65.0 5.69e-01 100.0% 82.8%
1736491 264.1.1.2 ↗ beta barrels › LigT-like › LigT-related › LigT-related › Corona_NS2A 0.71 65.0 5.96e-01 100.0% 77.0%
1953031 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.71 64.0 5.58e-01 100.0% 70.9%
3990131 264.1.1.5 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2H-phosphodiest 0.70 63.0 5.21e-01 100.0% 80.0%
4031839 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.70 64.0 5.60e-01 100.0% 81.1%
3483252 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.69 55.0 5.14e-01 84.3% 82.9%
1117634 264.1.1.8 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS,AKAP7_RIRII_bdg 0.69 62.0 4.94e-01 100.0% 65.2%
4486408 2.1.1.326 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF5482 0.55 43.0 4.07e-01 87.0% 72.4%
3387846 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.52 36.0 3.64e-01 72.2% 85.8%