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KU160494.1__ALY07118.1__VmeM32_00131__00122

Bact-Vir

KU160494.1__ALY07118.1__VmeM32_00131__00122

Identity

Accession:
KU160494 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-72
PDB
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xtlA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.70 49.0 4.09e-01 72.9% 48.5%
2fmyA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 45.0 3.43e-01 72.9% 28.7%
1ft9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 45.0 3.44e-01 72.9% 29.8%
5d1iA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 47.0 3.75e-01 72.9% 39.3%
1hqz800 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.68 46.0 3.60e-01 71.2% 35.6%
1ah1A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 48.0 3.71e-01 76.3% 53.5%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 49.0 3.70e-01 83.1% 89.2%
4zrxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 44.0 3.63e-01 71.2% 42.9%
3gzaB02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 45.0 3.76e-01 72.9% 46.9%
2g2nC00 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.64 45.0 3.67e-01 74.6% 45.5%
2cdoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 45.0 3.41e-01 74.6% 39.9%
4bfiB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 44.0 3.59e-01 72.9% 60.7%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.63 43.0 3.21e-01 72.9% 31.7%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.63 44.0 3.64e-01 72.9% 92.7%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 43.0 3.77e-01 74.6% 45.3%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 50.0 3.88e-01 93.2% 87.2%
4h4fA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 50.0 4.14e-01 96.6% 48.2%
2pndA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 43.0 3.47e-01 72.9% 58.0%
4mz2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 43.0 3.54e-01 72.9% 63.1%
1vw4U00 3.30.1390.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 0.62 52.0 4.77e-01 98.3% 89.0%
3f8uB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 43.0 3.38e-01 72.9% 60.3%
4lhsA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 43.0 3.21e-01 72.9% 32.9%
2wnvD00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.61 42.0 3.28e-01 72.9% 41.4%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.61 41.0 3.69e-01 72.9% 57.6%
2xxlA03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 49.0 3.90e-01 96.6% 42.3%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 42.0 3.14e-01 72.9% 75.4%
2w91A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 50.0 4.08e-01 89.8% 52.4%
2f91A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 49.0 4.05e-01 96.6% 51.3%
2huhA01 2.60.40.1600 Mainly Beta › Sandwich › Immunoglobulin-like › Smr-associated-like 0.58 40.0 3.13e-01 72.9% 37.5%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 40.0 3.36e-01 72.9% 70.5%
2vtfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 4.12e-01 89.8% 58.2%
1vq8B03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.58 46.0 3.82e-01 89.8% 75.7%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.57 48.0 4.59e-01 96.6% 100.0%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.57 39.0 3.26e-01 74.6% 40.2%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.57 33.0 3.16e-01 98.3% 44.3%
4uapA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 38.0 2.92e-01 71.2% 30.7%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.56 48.0 3.73e-01 96.6% 63.4%
3eeaA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 40.0 2.92e-01 72.9% 63.4%
1h3dA03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 39.0 3.82e-01 76.3% 100.0%
2drvA00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.56 39.0 2.82e-01 76.3% 26.2%
2yjlA00 2.60.40.2990 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.47e-01 83.1% 54.6%
3up6A01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 45.0 3.41e-01 98.3% 44.0%
3r5xD02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 38.0 2.80e-01 72.9% 50.3%
2frgP00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.65e-01 89.8% 63.2%
1vwxB03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.55 43.0 3.49e-01 89.8% 78.9%
2xepB02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 37.0 2.43e-01 71.2% 80.9%
3lqcA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 37.0 2.90e-01 74.6% 46.4%
1wscA01 3.30.700.20 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 0.54 46.0 3.52e-01 100.0% 63.8%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 37.0 3.05e-01 72.9% 48.4%
2pjyC00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 43.0 4.03e-01 96.6% 98.7%
2j8bA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 41.0 3.89e-01 96.6% 94.9%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.51 36.0 2.83e-01 78.0% 69.7%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.51 41.0 3.57e-01 89.8% 92.6%
2xf1A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 41.0 3.39e-01 96.6% 66.4%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.51 42.0 2.73e-01 100.0% 41.5%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 35.0 3.04e-01 74.6% 53.5%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3177414 4076.1.1.2 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI 0.74 58.0 6.26e-01 91.5% 100.0%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.72 43.0 4.79e-01 96.6% 77.8%
4938061 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 50.0 4.03e-01 74.6% 50.9%
3923658 3519.1.1.0 beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain 0.70 49.0 4.14e-01 74.6% 91.0%
3510118 4076.1.1.0 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.68 57.0 5.95e-01 96.6% 100.0%
5012930 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 46.0 4.09e-01 72.9% 55.3%
3401548 221.1.1.69 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SNX17-27-31_F1_FERM 0.66 50.0 4.19e-01 86.4% 48.0%
1937230 2010.1.1.1 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.66 49.0 3.68e-01 83.1% 87.5%
5032056 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 46.0 3.88e-01 74.6% 84.5%
4250547 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.66 45.0 3.44e-01 72.9% 49.3%
3390073 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.66 45.0 3.58e-01 71.2% 53.0%
3891117 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.66 45.0 3.55e-01 71.2% 55.8%
3925297 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 45.0 3.58e-01 72.9% 40.8%
3881456 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 44.0 3.48e-01 72.9% 56.8%
3983109 11.1.4.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Transthyretin 0.64 45.0 4.18e-01 74.6% 68.0%
3779693 11.1.1.143 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Receptor_2B4 0.63 44.0 3.67e-01 74.6% 59.1%
3813125 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 44.0 3.21e-01 72.9% 42.6%
4963 4012.1.1.1 a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase › TOPRIM_C 0.63 42.0 4.66e-01 71.2% 100.0%
3971972 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.62 44.0 3.57e-01 74.6% 45.2%
5049950 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 43.0 3.37e-01 72.9% 81.7%
3900161 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 44.0 3.31e-01 74.6% 35.0%
4027198 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.62 51.0 4.29e-01 91.5% 84.0%
3386935 2484.1.1.53 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB_Mbl 0.60 51.0 3.79e-01 94.9% 76.7%
3497076 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 43.0 3.81e-01 94.9% 51.1%
3936822 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.59 45.0 4.34e-01 91.5% 74.3%
3164772 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 42.0 4.02e-01 76.3% 98.6%
3237024 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 42.0 3.44e-01 91.5% 38.3%
4944314 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 40.0 3.15e-01 71.2% 62.4%
4024947 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 44.0 3.56e-01 81.4% 80.0%
5007504 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.58 50.0 3.30e-01 100.0% 48.3%
3386487 223.1.1.53 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_6 0.58 40.0 3.17e-01 72.9% 72.5%
3540637 11.1.1.1003 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26194 0.58 45.0 3.50e-01 88.1% 40.0%
3891071 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 43.0 4.09e-01 83.1% 98.6%
4946439 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 42.0 3.13e-01 78.0% 86.7%
4015448 223.1.1.94 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS-like 0.58 39.0 3.21e-01 71.2% 83.6%
5002952 304.4.1.82 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3303 0.58 40.0 3.63e-01 76.3% 84.4%
3707427 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 46.0 3.83e-01 98.3% 46.7%
3650185 221.1.1.166 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 0.57 39.0 3.56e-01 84.7% 50.6%
3935777 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 37.0 3.48e-01 76.3% 50.0%
3232933 11.1.1.1234 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF870 0.57 39.0 3.22e-01 72.9% 47.0%
3892042 382.1.1.1 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.57 46.0 4.23e-01 100.0% 67.1%
4008377 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 39.0 3.21e-01 72.9% 47.3%
169110 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.57 48.0 4.60e-01 96.6% 100.0%
4337080 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 39.0 3.08e-01 74.6% 46.4%
3781112 3561.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 0.56 47.0 2.86e-01 100.0% 21.6%
5038998 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 39.0 3.10e-01 72.9% 43.3%
4440530 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 48.0 3.58e-01 94.9% 57.2%
3883258 382.1.1.1 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.55 43.0 4.07e-01 89.8% 98.6%
5070388 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 45.0 3.44e-01 94.9% 38.6%
3700429 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.54 40.0 2.98e-01 78.0% 80.0%
3933905 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.53 43.0 3.39e-01 96.6% 61.4%
5048876 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.53 40.0 3.99e-01 89.8% 86.2%
5052575 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 36.0 2.63e-01 72.9% 63.9%
3233763 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.24e-01 83.1% 53.9%
3711910 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 38.0 2.79e-01 78.0% 88.1%
4028910 822.1.1.1 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.52 36.0 3.55e-01 89.8% 69.2%
3244287 223.2.1.34 a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 0.52 36.0 2.59e-01 72.9% 51.8%
3863856 382.1.1.16 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 0.51 41.0 3.88e-01 100.0% 96.2%
3497622 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 42.0 4.06e-01 96.6% 97.1%
3746678 382.1.1.16 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 0.51 40.0 3.85e-01 96.6% 97.3%
3907468 382.1.1.2 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.51 38.0 3.59e-01 89.8% 86.3%
3779994 223.2.1.34 a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 0.51 37.0 2.83e-01 83.1% 81.2%
4974510 11.1.1.1403 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1616 0.50 41.0 3.44e-01 94.9% 53.6%
3878866 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.50 38.0 2.90e-01 89.8% 51.2%