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KU160494.1__ALY07142.1__VmeM32_00156__00147

Bact-Vir

KU160494.1__ALY07142.1__VmeM32_00156__00147

Identity

Accession:
KU160494 ↗
Kingdom:
phage

Quality

88.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Vibrio_phage_vB_VmeM-32

TaxID: 1775142

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-138
PDB
Domain cluster: rep: NC_020842.1__YP_007673413.1__CGPG_00031__00031__D20-185
CATH (65)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.86 79.0 7.21e-01 97.5% 86.5%
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.84 75.0 6.94e-01 94.2% 99.3%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.83 77.0 6.70e-01 97.5% 97.1%
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.81 75.0 6.85e-01 97.5% 96.1%
6x1kA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.77 70.0 7.16e-01 95.0% 100.0%
2rckA01 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.69 55.0 4.52e-01 85.1% 82.6%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.68 60.0 5.30e-01 95.0% 72.4%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.65 55.0 4.30e-01 92.6% 98.1%
1i78B00 2.40.128.90 Mainly Beta › Beta Barrel › Lipocalin › OMPT-like 0.65 57.0 4.38e-01 97.5% 97.9%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.65 57.0 5.14e-01 95.0% 73.6%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.64 51.0 4.46e-01 85.1% 96.7%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 57.0 4.91e-01 97.5% 66.8%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.63 55.0 4.29e-01 94.2% 100.0%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 53.0 5.06e-01 90.1% 90.6%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 52.0 5.01e-01 88.4% 91.0%
3v8uA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.62 40.0 4.55e-01 98.3% 88.9%
1a0sP00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.61 53.0 3.60e-01 92.6% 98.1%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 51.0 4.80e-01 89.3% 89.4%
3fidA00 2.40.128.140 Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein 0.60 51.0 3.88e-01 92.6% 99.7%
3ff0A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 50.0 4.75e-01 88.4% 85.8%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 51.0 4.80e-01 91.7% 89.9%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 50.0 4.90e-01 88.4% 89.8%
3hzpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 50.0 4.95e-01 89.3% 92.1%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 49.0 4.50e-01 86.8% 100.0%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.59 54.0 3.85e-01 99.2% 93.2%
3dm8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 50.0 4.84e-01 90.9% 90.4%
3robA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 49.0 4.80e-01 89.3% 92.4%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 49.0 4.79e-01 89.3% 99.2%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 51.0 4.87e-01 95.0% 96.5%
3jtyB01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.59 48.0 3.42e-01 88.4% 95.3%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.58 52.0 4.15e-01 97.5% 84.3%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 50.0 4.94e-01 93.4% 100.0%
4l8oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 48.0 4.30e-01 87.6% 75.0%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 48.0 4.81e-01 88.4% 95.9%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 48.0 4.70e-01 89.3% 90.7%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 50.0 4.96e-01 95.9% 100.0%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 49.0 4.55e-01 95.9% 96.8%
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 4.67e-01 86.0% 93.2%
3ejvA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 48.0 4.34e-01 90.1% 95.0%
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 47.0 4.56e-01 87.6% 87.2%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 49.0 4.73e-01 93.4% 96.3%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 49.0 4.60e-01 94.2% 94.6%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 49.0 4.90e-01 95.0% 99.2%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 49.0 4.41e-01 95.0% 95.2%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 4.52e-01 86.8% 96.0%
6wimA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.56 50.0 3.56e-01 98.3% 94.8%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 49.0 4.72e-01 96.7% 96.4%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 49.0 4.78e-01 97.5% 99.3%
3ebyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 48.0 4.47e-01 94.2% 96.7%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 48.0 4.68e-01 95.9% 100.0%
4gf4A00 2.40.160.180 Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB 0.55 47.0 3.53e-01 92.6% 90.3%
5dl8A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.54 47.0 3.32e-01 97.5% 98.0%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 4.31e-01 89.3% 89.7%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 47.0 4.38e-01 95.9% 90.6%
1af6A00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.53 45.0 3.12e-01 93.4% 98.6%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 46.0 4.56e-01 96.7% 100.0%
5dl7A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.52 46.0 3.28e-01 99.2% 99.3%
1cbyA00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.52 42.0 3.42e-01 86.0% 51.1%
3njtA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.52 48.0 3.53e-01 99.2% 92.8%
2f1cX00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.52 46.0 3.59e-01 95.9% 67.5%
3efmA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.51 47.0 3.17e-01 99.2% 99.5%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.51 43.0 4.00e-01 93.4% 89.0%
4e6fA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.51 42.0 3.73e-01 88.4% 89.5%
1bh3A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.51 44.0 3.31e-01 94.2% 98.3%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.50 38.0 3.83e-01 81.0% 77.6%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4063158 5084.1.1.7 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagP 0.90 85.0 7.47e-01 98.3% 87.3%
3967771 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.90 83.0 8.09e-01 95.9% 99.2%
3838164 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.85 78.0 6.61e-01 95.9% 98.4%
3840054 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.85 66.0 6.27e-01 80.2% 99.3%
3839285 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.85 77.0 6.52e-01 95.0% 99.5%
3385673 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.84 78.0 6.97e-01 97.5% 91.3%
3838829 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.84 78.0 6.60e-01 97.5% 98.9%
3838035 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.84 77.0 6.34e-01 96.7% 96.0%
4299005 5084.1.1.21 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › TSA 0.83 78.0 6.58e-01 100.0% 92.6%
4537321 5084.1.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.82 74.0 6.44e-01 97.5% 90.6%
3976237 5084.6.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Tsx-like channel › Tsx-like channel › Channel_Tsx 0.73 64.0 5.15e-01 94.2% 99.6%
4480962 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.68 61.0 4.49e-01 96.7% 87.7%
3959285 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.68 45.0 5.23e-01 80.2% 96.4%
4677412 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.66 60.0 4.33e-01 97.5% 87.1%
3698353 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.65 53.0 5.23e-01 85.1% 93.6%
4347483 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.64 57.0 4.09e-01 98.3% 76.6%
4315252 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.62 53.0 4.97e-01 90.1% 86.2%
3967388 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.62 53.0 3.94e-01 92.6% 92.4%
399927 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.62 53.0 4.87e-01 90.1% 82.4%
3971597 5084.5.1.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.62 53.0 3.79e-01 91.7% 96.6%
862806 4200.1.1.2 ↗ beta barrels › YmcC-like › YmcC-like › YmcC-like › DUF3108_like 0.62 53.0 4.46e-01 95.9% 78.5%
3432106 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.61 46.0 4.65e-01 91.7% 78.7%
4184524 5084.5.1.18 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C 0.61 49.0 3.61e-01 86.8% 95.9%
3281675 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 46.0 4.92e-01 81.8% 89.5%
4318781 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.61 53.0 3.91e-01 94.2% 63.8%
6405 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.61 52.0 5.04e-01 90.1% 99.2%
3291726 243.1.1.77 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.61 49.0 4.48e-01 84.3% 76.0%
3838109 5084.9.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Lipid A deacylase LpxR › Lipid A deacylase LpxR › LpxR 0.61 55.0 4.39e-01 97.5% 93.5%
4006163 5084.5.4.13 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › DUF481, Porin_OmpG 0.60 49.0 3.71e-01 88.4% 97.3%
4009827 5084.5.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.59 48.0 3.38e-01 88.4% 93.3%
1674783 243.1.1.15 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › T4BSS_DotI_IcmL 0.59 49.0 4.67e-01 88.4% 92.1%
3945018 5084.5.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.58 48.0 3.37e-01 88.4% 95.4%
4449332 5084.5.1.18 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C 0.58 52.0 3.72e-01 96.7% 68.5%
3944680 5084.5.3.7 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › BCSC_C 0.58 51.0 3.64e-01 97.5% 94.4%
3332026 331.3.1.28 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 0.57 53.0 4.52e-01 100.0% 68.4%
5009713 243.1.1.1 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.57 48.0 4.39e-01 90.1% 91.9%
3278986 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 49.0 4.45e-01 90.1% 77.4%
3281242 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.57 48.0 4.76e-01 90.1% 93.8%
4152363 243.1.1.115 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29733 0.57 48.0 4.80e-01 89.3% 93.5%
3966665 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.57 48.0 3.34e-01 93.4% 98.6%
4329332 5084.5.1.18 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C 0.57 50.0 3.44e-01 95.0% 63.9%
3957821 243.1.1.77 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.56 47.0 4.63e-01 87.6% 93.8%
3962739 243.1.1.77 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.56 46.0 4.31e-01 87.6% 79.3%
3385752 5084.5.4.7 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › DUF2860 0.56 49.0 3.76e-01 97.5% 81.7%
3395729 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.56 47.0 4.33e-01 91.7% 80.6%
2141087 5084.5.1.11 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.56 51.0 3.63e-01 100.0% 93.7%
3971296 243.1.1.5 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Tim44 0.56 46.0 4.54e-01 88.4% 91.5%
4513489 5084.5.2.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.56 47.0 3.40e-01 92.6% 98.3%
3813082 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.55 43.0 3.83e-01 85.1% 68.1%
4662377 5084.5.4.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.55 49.0 3.74e-01 100.0% 95.6%
3980921 5084.5.1.18 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C 0.55 49.0 3.55e-01 97.5% 66.8%
3957386 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.55 48.0 4.22e-01 96.7% 73.9%
3588474 243.1.1.17 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.54 45.0 4.59e-01 88.4% 96.7%
3839826 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.54 48.0 3.38e-01 98.3% 65.2%
3969139 5084.5.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.54 47.0 3.23e-01 97.5% 92.6%
4964191 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 46.0 3.90e-01 95.9% 93.8%
3941948 5084.5.1.18 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C 0.53 47.0 3.47e-01 95.9% 73.5%
4591679 5084.5.1.18 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C 0.53 48.0 3.42e-01 99.2% 74.7%
1806543 5084.5.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PgaA_barrel 0.53 46.0 3.54e-01 97.5% 99.0%
1734925 5084.5.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.52 46.0 3.28e-01 99.2% 99.3%
3980456 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.52 45.0 3.08e-01 94.2% 26.1%
3405242 5084.5.1.37 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Attacin_N, Attacin_C 0.51 46.0 3.98e-01 97.5% 67.2%