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KU160494.1__ALY07156.1__VmeM32_00170__00161
Bact-VirKU160494.1__ALY07156.1__VmeM32_00170__00161
Identity
- Accession:
- KU160494 ↗
- Kingdom:
- phage
Quality
72.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Vibrio_phage_vB_VmeM-32
TaxID: 1775142
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-40
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lejA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.75 | 55.0 | 3.55e-01 | 100.0% | 17.4% |
| 2yjlA00 | 2.60.40.2990 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.68 | 56.0 | 4.21e-01 | 100.0% | 39.8% |
| 1t4aA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.68 | 55.0 | 4.57e-01 | 100.0% | 96.2% |
| 2dmhA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.66 | 54.0 | 3.79e-01 | 100.0% | 88.6% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.62 | 49.0 | 4.70e-01 | 100.0% | 82.0% |
| 3c6mC01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.62 | 48.0 | 4.75e-01 | 100.0% | 90.9% |
| 4ggmX02 | 3.40.140.80 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › LpxI C-terminal catalytic domain | 0.62 | 49.0 | 3.42e-01 | 100.0% | 28.0% |
| 1rhfA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 44.0 | 3.54e-01 | 100.0% | 37.6% |
| 1wv3A01 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.61 | 50.0 | 4.16e-01 | 100.0% | 97.4% |
| 3cu7A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.61 | 49.0 | 3.77e-01 | 100.0% | 40.6% |
| 3nuhB02 | 3.30.300.370 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.61 | 50.0 | 3.64e-01 | 100.0% | 89.3% |
| 2cs4A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 44.0 | 3.60e-01 | 100.0% | 38.9% |
| 2vvfA01 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 42.0 | 3.02e-01 | 87.2% | 25.5% |
| 2wnvD00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 47.0 | 3.39e-01 | 100.0% | 33.1% |
| 6jkvA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.58 | 43.0 | 2.83e-01 | 100.0% | 27.4% |
| 3au4A02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 43.0 | 3.57e-01 | 100.0% | 44.7% |
| 2jfrA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.57 | 43.0 | 2.84e-01 | 100.0% | 24.4% |
| 2a90A02 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.57 | 44.0 | 4.03e-01 | 97.4% | 100.0% |
| 4jxuA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.57 | 40.0 | 2.97e-01 | 82.1% | 71.3% |
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.56 | 42.0 | 3.69e-01 | 100.0% | 50.7% |
| 4x9xA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 42.0 | 3.03e-01 | 94.9% | 55.0% |
| 1pzxA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.56 | 40.0 | 4.11e-01 | 100.0% | 91.4% |
| 2g7zA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 41.0 | 2.80e-01 | 100.0% | 21.3% |
| 7l5aA02 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.54 | 37.0 | 2.82e-01 | 84.6% | 33.6% |
| 2dt8A01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 39.0 | 2.82e-01 | 89.7% | 73.8% |
| 3mjgX01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.45e-01 | 94.9% | 69.8% |
| 1y8xB00 | 3.10.290.20 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 | 0.53 | 44.0 | 3.44e-01 | 100.0% | 50.0% |
| 6cngA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.53 | 39.0 | 3.95e-01 | 100.0% | 89.5% |
| 3fdjA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.53 | 39.0 | 3.93e-01 | 100.0% | 89.5% |
| 7pupA01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 45.0 | 2.82e-01 | 100.0% | 36.3% |
| 5zjgA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.52 | 41.0 | 3.07e-01 | 94.9% | 72.3% |
| 3cswC01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.52 | 36.0 | 2.97e-01 | 89.7% | 71.7% |
| 3jr7A02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.52 | 38.0 | 3.87e-01 | 100.0% | 89.5% |
| 3rbsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 41.0 | 3.31e-01 | 100.0% | 44.3% |
| 3lcyA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 2.94e-01 | 84.6% | 38.4% |
| 4ottA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.51 | 41.0 | 2.99e-01 | 94.9% | 65.3% |
| 1txoB00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.51 | 37.0 | 2.48e-01 | 100.0% | 55.1% |
| 3fysA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 38.0 | 2.78e-01 | 100.0% | 52.3% |
| 2cryA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 36.0 | 2.89e-01 | 87.2% | 42.2% |
| 3b43A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 36.0 | 2.90e-01 | 84.6% | 37.1% |
| 2mlbA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 37.0 | 3.27e-01 | 100.0% | 82.3% |
| 2wp3O00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 37.0 | 2.91e-01 | 84.6% | 39.2% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4524847 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.69 | 52.0 | 3.72e-01 | 87.2% | 71.5% |
| 3715519 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.67 | 51.0 | 3.27e-01 | 89.7% | 17.6% |
| 3586917 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.66 | 55.0 | 3.29e-01 | 100.0% | 12.4% |
| 3964707 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.66 | 50.0 | 3.16e-01 | 100.0% | 15.2% |
| 3988217 | 241.12.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like | 0.65 | 52.0 | 3.36e-01 | 100.0% | 18.5% |
| 3718648 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.65 | 46.0 | 3.53e-01 | 82.1% | 30.6% |
| 4331897 | 235.1.1.41 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › TraH_2 | 0.63 | 48.0 | 3.45e-01 | 100.0% | 25.3% |
| 3816857 | 223.1.1.84 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY+GAF | 0.63 | 45.0 | 2.64e-01 | 84.6% | 47.9% |
| 3497076 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.62 | 47.0 | 3.79e-01 | 100.0% | 40.0% |
| 3993535 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.62 | 50.0 | 4.07e-01 | 94.9% | 92.5% |
| 3494105 | 221.1.1.64 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N | 0.61 | 49.0 | 4.10e-01 | 100.0% | 48.8% |
| 4458441 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.61 | 49.0 | 3.40e-01 | 100.0% | 25.2% |
| 3919304 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.61 | 45.0 | 3.52e-01 | 100.0% | 35.0% |
| 5030638 | 2492.1.1.16 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › TM1506 | 0.59 | 45.0 | 3.34e-01 | 100.0% | 30.4% |
| None | — | 0.59 | 43.0 | 2.93e-01 | 100.0% | 19.1% | |
| 3258276 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.59 | 47.0 | 3.04e-01 | 100.0% | 29.3% |
| 3534644 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.59 | 44.0 | 3.50e-01 | 100.0% | 36.8% |
| 4958377 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.59 | 44.0 | 4.28e-01 | 100.0% | 75.0% |
| 184942 | 10.2.1.56 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › P2_N | 0.58 | 42.0 | 3.02e-01 | 87.2% | 25.5% |
| 3738248 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.58 | 44.0 | 3.82e-01 | 100.0% | 49.3% |
| 3176986 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.57 | 43.0 | 3.56e-01 | 100.0% | 42.4% |
| 4986672 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.57 | 40.0 | 2.69e-01 | 76.9% | 49.1% |
| 3887305 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 41.0 | 3.88e-01 | 100.0% | 63.6% |
| 4944976 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.56 | 40.0 | 2.80e-01 | 84.6% | 69.7% |
| 3405953 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.56 | 46.0 | 3.49e-01 | 100.0% | 77.1% |
| 1937101 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.56 | 41.0 | 2.80e-01 | 100.0% | 21.3% |
| 4208835 | 221.1.1.113 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 | 0.55 | 43.0 | 3.21e-01 | 94.9% | 80.9% |
| 3340161 | 223.1.1.1 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY | 0.55 | 39.0 | 2.72e-01 | 89.7% | 34.1% |
| 4451316 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.54 | 40.0 | 2.89e-01 | 94.9% | 53.5% |
| 3232689 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.54 | 43.0 | 3.35e-01 | 94.9% | 71.6% |
| 3213885 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.54 | 42.0 | 3.21e-01 | 94.9% | 76.2% |
| 3258524 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.54 | 43.0 | 2.74e-01 | 100.0% | 30.2% |
| 3898585 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.53 | 41.0 | 3.30e-01 | 94.9% | 68.9% |
| 3399432 | 382.1.1.14 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF753 | 0.52 | 41.0 | 3.41e-01 | 100.0% | 46.3% |
| 4944238 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.52 | 38.0 | 2.78e-01 | 94.9% | 56.0% |
| 4656730 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.52 | 37.0 | 2.44e-01 | 97.4% | 36.6% |
| 3244813 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.50 | 37.0 | 2.81e-01 | 100.0% | 77.0% |