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KU160494.1__ALY07167.1__VmeM32_00181__00172
Bact-VirKU160494.1__ALY07167.1__VmeM32_00181__00172
Identity
- Accession:
- KU160494 ↗
- Kingdom:
- phage
Quality
71.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Vibrio_phage_vB_VmeM-32
TaxID: 1775142
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-122
Domain cluster:
rep: CG10_big_fil_rev_8_21_14_0-10_scaffold_17_prodigal-single.1__X__X__00080__D4-138
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01743.27 best | PolyA_pol | 73.2 | 3.40e-20 | 99.2% | 99.2% |
D2
medium
residues 124-223
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h37A02 | 1.10.110.30 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › | 0.85 | 67.0 | 7.22e-01 | 83.0% | 95.3% |
| 1mivA02 | 1.10.110.30 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › | 0.81 | 69.0 | 7.08e-01 | 89.0% | 96.9% |
| 4wbyA02 | 1.10.3090.10 | Mainly Alpha › Orthogonal Bundle › cca-adding enzyme, domain 2 › cca-adding enzyme, domain 2 | 0.80 | 75.0 | 5.54e-01 | 100.0% | 57.6% |
| 4dwnA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.56 | 40.0 | 4.10e-01 | 84.0% | 77.3% |
| 4hbdA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.55 | 48.0 | 3.70e-01 | 99.0% | 53.1% |
| 1lshA02 | 1.25.10.20 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Vitellinogen, superhelical | 0.51 | 44.0 | 3.14e-01 | 100.0% | 41.8% |
| 3ajcA01 | 1.10.220.30 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain | 0.51 | 39.0 | 3.91e-01 | 99.0% | 81.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4096783 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.82 | 76.0 | 5.54e-01 | 100.0% | 56.1% |
| 3741889 | 109.4.1.103 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GLE1 | 0.56 | 46.0 | 3.39e-01 | 91.0% | 53.0% |
| 3345764 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 42.0 | 3.88e-01 | 100.0% | 65.2% |
| 3950429 | 7512.1.1.10 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 | 0.53 | 45.0 | 3.44e-01 | 94.0% | 58.0% |
| 4563088 | 109.2.1.7 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Terpene_synth | 0.52 | 43.0 | 3.44e-01 | 94.0% | 57.7% |
| 3173846 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 44.0 | 3.68e-01 | 100.0% | 77.3% |
D3
medium
residues 224-332