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KU160494.1__ALY07178.1__VmeM32_00192__00183

Bact-Vir

KU160494.1__ALY07178.1__VmeM32_00192__00183

Identity

Accession:
KU160494 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 47-99
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.72 48.0 4.07e-01 83.0% 40.9%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 54.0 5.58e-01 86.8% 100.0%
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.68 52.0 4.65e-01 83.0% 80.0%
7mi4A02 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.66 51.0 4.55e-01 83.0% 81.1%
1x9yA01 3.10.500.10 Alpha Beta › Roll › prostaphopain b, domain 1 › Staphopain proregion domain 0.66 53.0 3.79e-01 92.5% 52.9%
3ipjA01 3.30.1360.60 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB 0.66 50.0 4.50e-01 86.8% 87.5%
2jmbA00 2.40.128.290 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 0.65 55.0 4.93e-01 100.0% 96.2%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 54.0 4.10e-01 98.1% 45.0%
4khbD02 2.30.29.220 Mainly Beta › Roll › PH-domain like › Structure-specific recognition protein (SSRP1) 0.63 48.0 4.21e-01 83.0% 79.0%
2ljwA00 3.30.428.40 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 0.63 46.0 3.82e-01 81.1% 87.5%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 55.0 4.02e-01 100.0% 71.5%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 54.0 3.96e-01 100.0% 66.9%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 46.0 4.13e-01 83.0% 88.7%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.62 48.0 4.61e-01 92.5% 73.8%
3u1xA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.62 52.0 3.53e-01 100.0% 59.0%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 54.0 4.00e-01 100.0% 73.0%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 53.0 3.88e-01 100.0% 66.9%
2uwaA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 52.0 3.38e-01 100.0% 41.6%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 52.0 3.57e-01 100.0% 51.8%
1q7hA01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.61 50.0 4.76e-01 96.2% 81.5%
4bpzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 52.0 3.40e-01 100.0% 48.6%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.60 50.0 3.94e-01 96.2% 94.1%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.60 45.0 3.96e-01 83.0% 73.2%
1mveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 51.0 3.37e-01 100.0% 45.0%
3m4xA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 48.0 3.14e-01 100.0% 21.8%
4ccvA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 48.0 3.89e-01 98.1% 75.7%
3lidA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 40.0 3.38e-01 75.5% 95.8%
6xofA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 3.24e-01 100.0% 44.3%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 44.0 4.10e-01 88.7% 85.5%
3fcdB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 38.0 3.10e-01 79.2% 33.6%
2dqaA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.55 46.0 3.58e-01 96.2% 97.6%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 3.62e-01 90.6% 65.7%
4iusA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 40.0 2.60e-01 79.2% 28.8%
2x49A01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.55 43.0 3.81e-01 100.0% 71.9%
2re3B03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 32.0 3.64e-01 88.7% 100.0%
3rkgA01 2.40.128.330 Mainly Beta › Beta Barrel › Lipocalin › 0.54 39.0 3.23e-01 75.5% 83.0%
3b59A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 38.0 3.03e-01 83.0% 34.7%
3db5A00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.53 36.0 2.78e-01 90.6% 29.8%
3fvcA01 2.30.30.1230 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 3.54e-01 84.9% 58.7%
1yqeA01 3.40.630.50 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like 0.53 42.0 2.99e-01 92.5% 79.6%
1avvA00 3.30.62.10 Alpha Beta › 2-Layer Sandwich › Nef Regulatory Factor › Nef Regulatory Factor 0.52 38.0 3.29e-01 84.9% 49.5%
2rh0A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.75e-01 84.9% 70.3%
2eo5A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 43.0 3.22e-01 98.1% 40.5%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.51 40.0 3.78e-01 96.2% 97.2%
3td9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 41.0 3.08e-01 94.3% 88.1%
1ibaA00 3.30.1360.60 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB 0.50 37.0 3.37e-01 83.0% 88.5%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4947234 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.78 69.0 4.16e-01 100.0% 50.1%
4484289 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.77 46.0 3.07e-01 100.0% 16.8%
4987025 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.76 63.0 3.95e-01 92.5% 18.6%
4960065 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.73 63.0 4.05e-01 100.0% 63.5%
4950628 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.72 61.0 3.91e-01 100.0% 41.4%
4119657 3740.1.1.1 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C 0.72 61.0 3.94e-01 100.0% 43.0%
5644 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.72 57.0 5.61e-01 92.5% 83.9%
5023356 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.70 60.0 3.66e-01 100.0% 48.6%
4952379 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.70 58.0 3.72e-01 94.3% 19.6%
5066751 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.70 59.0 3.66e-01 100.0% 47.6%
5025174 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.69 57.0 5.28e-01 94.3% 75.7%
2841859 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 59.0 5.32e-01 98.1% 97.3%
3279474 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.67 51.0 3.93e-01 81.1% 67.8%
3951704 103.12.1.0 alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.67 58.0 5.28e-01 98.1% 98.6%
3660108 1.1.1.19 beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.66 52.0 4.26e-01 86.8% 100.0%
4575824 2.8.1.2 beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C_2 0.65 58.0 5.30e-01 100.0% 94.3%
4954638 241.9.1.2 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 0.65 51.0 4.00e-01 84.9% 40.4%
3399883 4161.1.1.0 beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.64 56.0 3.52e-01 98.1% 44.3%
4351616 220.1.1.10 beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.64 48.0 3.77e-01 83.0% 88.3%
4649506 3239.1.1.1 alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.64 48.0 2.97e-01 83.0% 18.7%
5044949 241.9.1.0 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like 0.64 48.0 3.79e-01 83.0% 40.8%
3512465 1.1.1.19 beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.64 53.0 4.08e-01 92.5% 92.5%
3298595 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.63 51.0 3.73e-01 92.5% 58.7%
4335502 2.8.1.2 beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C_2 0.63 55.0 4.65e-01 100.0% 65.6%
4149829 220.1.1.114 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF5673 0.63 47.0 4.26e-01 83.0% 80.0%
4220914 220.1.1.10 beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.63 47.0 3.55e-01 83.0% 83.7%
4275082 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.62 54.0 3.46e-01 100.0% 45.4%
3632320 220.1.1.10 beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.62 46.0 3.68e-01 83.0% 78.3%
3480422 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 55.0 4.06e-01 100.0% 80.7%
145107 10.1.1.21 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.62 52.0 3.53e-01 100.0% 59.0%
None 0.60 52.0 3.43e-01 100.0% 47.1%
3394677 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 51.0 3.26e-01 98.1% 24.4%
4266955 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.60 41.0 3.93e-01 75.5% 60.0%
3604572 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.60 50.0 4.65e-01 100.0% 82.9%
5065809 3518.1.1.1 a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind 0.60 49.0 3.55e-01 94.3% 41.9%
4843435 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.60 42.0 3.83e-01 83.0% 53.9%
3935387 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.59 47.0 2.99e-01 98.1% 18.8%
185407 243.6.1.3 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › RsmF_methylt_CI 0.59 48.0 4.33e-01 100.0% 77.4%
5067171 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.59 48.0 4.63e-01 98.1% 81.5%
3588710 243.6.1.3 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › RsmF_methylt_CI 0.59 47.0 4.34e-01 98.1% 84.0%
3173084 331.1.1.13 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C 0.58 41.0 3.62e-01 79.2% 48.2%
3244142 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.58 50.0 3.37e-01 98.1% 63.8%
4584941 243.3.1.7 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Xylo_C 0.58 48.0 3.63e-01 98.1% 61.4%
3280341 211.1.1.24 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Ble-like_N 0.58 37.0 3.85e-01 88.7% 70.0%
3839444 241.9.1.2 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 0.58 49.0 3.86e-01 96.2% 47.5%
4974000 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.58 47.0 4.53e-01 98.1% 84.6%
4294910 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.58 41.0 4.13e-01 81.1% 74.5%
2717311 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.58 49.0 3.20e-01 100.0% 41.9%
4009148 292.2.1.14 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › SWIM 0.57 45.0 3.90e-01 92.5% 88.9%
3388925 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.57 42.0 3.60e-01 83.0% 82.1%
4082826 319.1.1.5 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.56 42.0 3.31e-01 83.0% 51.7%
3742310 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.56 46.0 2.97e-01 100.0% 30.2%
1117622 330.1.1.7 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsRBD2 0.56 42.0 3.53e-01 84.9% 58.4%
4981259 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.56 48.0 4.51e-01 98.1% 84.6%
3938003 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.56 42.0 3.57e-01 84.9% 77.9%
3511968 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.55 40.0 3.74e-01 81.1% 60.0%
4945305 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.55 44.0 3.87e-01 92.5% 82.4%
3895743 3615.1.1.7 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › CD20 0.54 41.0 2.85e-01 83.0% 57.9%
4029231 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.54 40.0 3.35e-01 84.9% 71.4%
5038704 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.54 47.0 3.27e-01 100.0% 70.0%
4030334 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.53 40.0 3.28e-01 83.0% 79.2%
1872769 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 38.0 3.74e-01 83.0% 72.4%
3869277 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.53 40.0 2.93e-01 92.5% 85.9%
3354954 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.52 38.0 3.29e-01 81.1% 74.4%
3275056 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.52 40.0 2.72e-01 84.9% 26.0%
3526919 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.52 38.0 3.23e-01 83.0% 44.2%
1295901 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.52 39.0 3.01e-01 84.9% 45.1%
3958770 10.1.1.40 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Arabino_trans_N 0.51 42.0 3.63e-01 94.3% 72.2%
3882038 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.51 44.0 3.18e-01 100.0% 67.7%
4983181 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 36.0 2.99e-01 84.9% 76.7%