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KU253712.1__AMB18599.1__Eldridge_016__00016
Bact-VirKU253712.1__AMB18599.1__Eldridge_016__00016
Identity
- Accession:
- KU253712 ↗
- Kingdom:
- phage
Quality
83.5
mean pLDDT
Taxonomy
TaxID: 1776293
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 7-121
Domain cluster:
rep: OM728304.1__WCS70090.1__Goe27_02120__00207__D1-113
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vbkA01 | 3.30.70.1510 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like | 0.54 | 31.0 | 3.63e-01 | 96.5% | 78.3% |
D2
medium
residues 122-186
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ushA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.76 | 52.0 | 4.42e-01 | 70.8% | 78.6% |
| 2uwqA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.67 | 42.0 | 3.83e-01 | 72.3% | 47.7% |
| 1o51A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 45.0 | 4.08e-01 | 70.8% | 95.5% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.64 | 45.0 | 3.87e-01 | 75.4% | 62.4% |
| 4p4tA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 44.0 | 2.81e-01 | 72.3% | 14.3% |
| 3nsjA02 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.62 | 42.0 | 3.39e-01 | 70.8% | 37.5% |
| 3fjsC00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 34.0 | 2.88e-01 | 70.8% | 31.8% |
| 6v55A01 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.60 | 39.0 | 3.29e-01 | 84.6% | 38.4% |
| 1vq3B00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.59 | 44.0 | 4.11e-01 | 81.5% | 100.0% |
| 2hyxA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 37.0 | 2.99e-01 | 70.8% | 32.1% |
| 1dq3A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.58 | 47.0 | 3.45e-01 | 90.8% | 83.6% |
| 5hkxA04 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 38.0 | 4.36e-01 | 84.6% | 100.0% |
| 2nrjA01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.57 | 49.0 | 3.18e-01 | 100.0% | 46.7% |
| 2cw8A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.57 | 46.0 | 3.42e-01 | 90.8% | 83.4% |
| 3rx9A00 | 2.60.40.4150 | Mainly Beta › Sandwich › Immunoglobulin-like › Type VI secretion system, lipoprotein SciN | 0.56 | 37.0 | 3.06e-01 | 70.8% | 53.1% |
| 1w99A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 38.0 | 2.78e-01 | 72.3% | 52.9% |
| 4npjB01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.55 | 40.0 | 3.20e-01 | 78.5% | 89.3% |
| 2dmhA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.55 | 39.0 | 3.07e-01 | 73.8% | 37.1% |
| 2yuwA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 37.0 | 3.32e-01 | 73.8% | 50.0% |
| 2cklB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 40.0 | 3.97e-01 | 95.4% | 76.1% |
| 1txoB00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.54 | 40.0 | 2.81e-01 | 83.1% | 32.2% |
| 5trbA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 39.0 | 3.84e-01 | 95.4% | 75.4% |
| 2dt8A01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 39.0 | 3.08e-01 | 90.8% | 35.6% |
| 3vk6A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 37.0 | 3.86e-01 | 95.4% | 88.1% |
| 1vajA02 | 3.30.1490.150 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Hypothetical protein ph0010; domain 2 | 0.51 | 35.0 | 3.38e-01 | 70.8% | 78.4% |
| 3jzyA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 38.0 | 3.14e-01 | 81.5% | 96.0% |
| 6x5vA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 41.0 | 3.68e-01 | 100.0% | 61.5% |
| 4r7eA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 37.0 | 3.64e-01 | 90.8% | 75.4% |
| 3w57A00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.50 | 35.0 | 3.02e-01 | 73.8% | 53.2% |
| 5irbA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 40.0 | 3.50e-01 | 100.0% | 56.7% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3297748 | 4076.1.1.2 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI | 0.68 | 41.0 | 4.45e-01 | 72.3% | 72.7% |
| 5048876 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.67 | 43.0 | 4.38e-01 | 72.3% | 66.2% |
| 164929 | 221.1.1.74 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ASPP2-like_RA | 0.67 | 42.0 | 3.83e-01 | 72.3% | 47.7% |
| 4027344 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.66 | 45.0 | 3.68e-01 | 72.3% | 44.2% |
| 3787741 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.65 | 40.0 | 4.19e-01 | 95.4% | 66.7% |
| 1401773 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 44.0 | 2.86e-01 | 70.8% | 16.2% |
| 5059796 | 4326.1.1.0 ↗ | a+b two layers › ERH-like › ERH-like › ERH-like | 0.65 | 43.0 | 4.30e-01 | 70.8% | 65.2% |
| 4228966 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.65 | 45.0 | 3.77e-01 | 72.3% | 96.4% |
| 3351227 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 45.0 | 2.82e-01 | 72.3% | 14.0% |
| 3377897 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 45.0 | 2.62e-01 | 72.3% | 8.8% |
| None | — | 0.65 | 45.0 | 2.58e-01 | 72.3% | 8.1% | |
| None | — | 0.63 | 44.0 | 2.55e-01 | 73.8% | 8.2% | |
| 4889680 | 11.2.1.43 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2+FerI | 0.62 | 43.0 | 2.86e-01 | 72.3% | 19.8% |
| 3698302 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.62 | 38.0 | 4.10e-01 | 72.3% | 74.5% |
| 3794544 | 376.1.1.115 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ, zf-Di19 | 0.61 | 43.0 | 3.28e-01 | 75.4% | 35.6% |
| 4553664 | 7590.1.1.7 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI | 0.60 | 45.0 | 3.01e-01 | 83.1% | 80.7% |
| 4106902 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.59 | 53.0 | 3.79e-01 | 100.0% | 42.6% |
| 3650976 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 40.0 | 3.74e-01 | 100.0% | 55.4% |
| 3247586 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.59 | 41.0 | 3.10e-01 | 73.8% | 31.2% |
| 3483496 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.58 | 37.0 | 4.11e-01 | 70.8% | 91.1% |
| 4198519 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.58 | 50.0 | 3.56e-01 | 100.0% | 41.0% |
| 4177272 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.57 | 51.0 | 3.61e-01 | 100.0% | 39.5% |
| 4134159 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.57 | 51.0 | 3.67e-01 | 100.0% | 42.2% |
| 3213885 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.56 | 39.0 | 3.35e-01 | 72.3% | 58.1% |
| 5042324 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.56 | 44.0 | 4.01e-01 | 87.7% | 62.2% |
| 3610401 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 41.0 | 4.29e-01 | 80.0% | 86.4% |
| 3694220 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 41.0 | 2.98e-01 | 80.0% | 58.4% |
| 162275 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.55 | 39.0 | 3.07e-01 | 73.8% | 37.1% |
| 3322777 | 109.4.1.1738 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, Eplus_motif, E_motif | 0.54 | 39.0 | 2.49e-01 | 76.9% | 25.7% |
| 3867225 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.54 | 38.0 | 3.62e-01 | 90.8% | 62.5% |
| 3853799 | 386.1.1.290 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451_C | 0.53 | 36.0 | 3.50e-01 | 72.3% | 61.3% |
| 3390573 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.52 | 41.0 | 4.24e-01 | 96.9% | 94.9% |
| 3918288 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 34.0 | 3.14e-01 | 70.8% | 46.3% |
| None | — | 0.52 | 44.0 | 2.59e-01 | 100.0% | 20.0% | |
| 3491906 | 376.1.1.66 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 | 0.51 | 39.0 | 3.79e-01 | 100.0% | 76.0% |
| 3406119 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.50 | 37.0 | 3.23e-01 | 81.5% | 75.5% |
| 3751321 | 386.1.1.323 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451_2nd | 0.50 | 41.0 | 3.27e-01 | 95.4% | 66.9% |